Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0972
(639 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 30 0.25
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces... 30 0.32
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 29 0.57
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp... 27 1.7
SPAC23H4.07c |srp102||signal recognition particle receptor beta ... 27 1.7
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr... 27 3.0
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 26 4.0
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 26 5.3
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.0
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 25 7.0
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 9.2
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 25 9.2
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 30.3 bits (65), Expect = 0.25
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = -1
Query: 267 RTVSGSRSSQSEDRAELGVSCDR-KDSEPVSILSSDDGDVRSSSFV-LIVVKLICDSYRP 94
+ ++GS Q + + C KD+ P+ + S DG VR + + K+ CDS +P
Sbjct: 379 KILTGSTIFQGHEDCVWELFCHEVKDNNPILLSLSSDGTVRGWKYTGEQLFKIRCDSKQP 438
Query: 93 LFLS 82
L +S
Sbjct: 439 LSMS 442
>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 681
Score = 29.9 bits (64), Expect = 0.32
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 12/93 (12%)
Frame = +2
Query: 155 SPSSDERMDTGSESFRSQD----------TPNSALSSDCDEREPDTVLRLQNPQTILRFS 304
SP+ ++G+ES + D TP S + ++ ++L+ Q+P L+ S
Sbjct: 283 SPADVSNNESGNESSKEPDKEHSTPIHPTTPVSRCARPSSRQQTISILQAQSP--FLKKS 340
Query: 305 DHDKINFNDSL--IHKMSNLHLDSPKINTRPHS 397
D ++ N N ++ I+K N+H +I+ HS
Sbjct: 341 DKERANLNKTMVSINKSINIHQSIHEISCPHHS 373
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 29.1 bits (62), Expect = 0.57
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -1
Query: 570 VARSSSILERLRSFSSSIL*TFFGIKSGKFSSGLDRPIKG 451
V S S L+++ F +IL FG++ KFS LD+ +G
Sbjct: 581 VCNSPSGLKKVEHFFKNILPLHFGLEKDKFSIFLDQVFRG 620
>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 27.5 bits (58), Expect = 1.7
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Frame = +2
Query: 110 QMSFTTIRTNEEDLTSPS-SDERMDTGSESFRSQDTPNSALSSDCDEREPDTVLRLQNPQ 286
+ SFT + + D T S + + E+F + P + +SS P TV+ +
Sbjct: 251 KFSFTEPSSEKVDNTETKFSKKTKNINDENFPN---PFNVISSYETSASPSTVIDQSSQV 307
Query: 287 TILRFSDHDKINFNDSLIHKMSNLHLDSPKINT 385
+ + + + + N+ I + +L LD+PKI++
Sbjct: 308 SSIFVNKRLRKSVNNQAISRSDSLSLDTPKIDS 340
>SPAC23H4.07c |srp102||signal recognition particle receptor beta
subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 27.5 bits (58), Expect = 1.7
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 467 SSPDENFPDLIPKKVHKIEDEKDLSLSSIEDERATFLFAAEE 592
+ P E L+ ++H I +EK+L L SI E + A++
Sbjct: 155 AQPAEKIQQLLKAELHNILEEKNLQLESIVSEDVDWESVADQ 196
>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 501
Score = 26.6 bits (56), Expect = 3.0
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 500 PKKVHKIEDEKDLSLSSIEDERATFLFAAEEYVKEQFGISPKTSS 634
P K ++ E+D+ LS + E + +E +K Q +SP S+
Sbjct: 356 PVKPASLQSEEDIQLSFKQPELSASSAELDEKLKSQCNVSPSPSN 400
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 26.2 bits (55), Expect = 4.0
Identities = 15/68 (22%), Positives = 32/68 (47%)
Frame = +2
Query: 89 NKGL*ESQMSFTTIRTNEEDLTSPSSDERMDTGSESFRSQDTPNSALSSDCDEREPDTVL 268
+KG S + +E++ SP+S + S F + ++ ++ DER P +
Sbjct: 577 SKGYNSSDYDLLRTHSLDENVNSPTSISSPSSKSSPFTKTTSKDTKSATTTDER-PSDFI 635
Query: 269 RLQNPQTI 292
RL + +++
Sbjct: 636 RLNSEESV 643
>SPCC132.01c ||SPCC1322.17c|DUF814 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1021
Score = 25.8 bits (54), Expect = 5.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 137 NEEDLTSPSSDERMDTGSESFRSQDTPNS 223
NE+ L++ DE+ ESF+ Q+ P S
Sbjct: 885 NEKGLSTEQRDEKKHAKVESFQRQEMPRS 913
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 25.4 bits (53), Expect = 7.0
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Frame = +2
Query: 149 LTSPSSDERMDTGSESFRSQDTPNSALSSDCDEREPDTVL-RLQNPQTILRFSDHDKINF 325
+TSP S S+ +PN++L +R P +L L+N S +
Sbjct: 585 VTSPKSGAYASPSKASYNQDSSPNASLEQCFVQRSPSKMLTTLRN-----NSSTFPSLRK 639
Query: 326 NDSLIHKMSNLHLDSPKINTRP 391
N + K + L SPK + P
Sbjct: 640 NAMIARKSTADSLSSPKRQSVP 661
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 25.4 bits (53), Expect = 7.0
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = +2
Query: 104 ESQMSFTTIRTNEEDLTSPSSDERMDTGSESFRSQDTPNSALSSDCDEREPDTVLRLQNP 283
+S +S + N E+L S SE S N+ SSD + T + +
Sbjct: 446 DSGISSENVSNNREELPSFRKRSSSSRQSEEIASLQAENAVFSSDPASNDEKTGNKKRKK 505
Query: 284 QTILRFSDHD--KINFNDSL 337
+++ D+D ++ F +SL
Sbjct: 506 KSVSWKPDNDLVQVKFIESL 525
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.0 bits (52), Expect = 9.2
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +3
Query: 198 SGHRTLLTRLCPQTATSGSQTPFSVCRTLKQSSG 299
S T LT + TATS S TPF +SG
Sbjct: 549 SASSTPLTSVNSTTATSASSTPFGNSTITSSASG 582
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 25.0 bits (52), Expect = 9.2
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +2
Query: 188 SESFRSQD--TPNSALSSDCDEREPDTVLRLQNPQTILRFSDHDKI 319
SE+ RS+ T ++ LS++ D E + + P TI +DH I
Sbjct: 667 SENKRSESELTMSNVLSNEGDRNEEGSEINSSQPSTINHGTDHINI 712
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,527,586
Number of Sequences: 5004
Number of extensions: 51710
Number of successful extensions: 186
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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