BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0972 (639 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 30 0.25 SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces... 30 0.32 SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 29 0.57 SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp... 27 1.7 SPAC23H4.07c |srp102||signal recognition particle receptor beta ... 27 1.7 SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr... 27 3.0 SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 26 4.0 SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 26 5.3 SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.0 SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 25 7.0 SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 9.2 SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 25 9.2 >SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|||Manual Length = 612 Score = 30.3 bits (65), Expect = 0.25 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%) Frame = -1 Query: 267 RTVSGSRSSQSEDRAELGVSCDR-KDSEPVSILSSDDGDVRSSSFV-LIVVKLICDSYRP 94 + ++GS Q + + C KD+ P+ + S DG VR + + K+ CDS +P Sbjct: 379 KILTGSTIFQGHEDCVWELFCHEVKDNNPILLSLSSDGTVRGWKYTGEQLFKIRCDSKQP 438 Query: 93 LFLS 82 L +S Sbjct: 439 LSMS 442 >SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces pombe|chr 2|||Manual Length = 681 Score = 29.9 bits (64), Expect = 0.32 Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 12/93 (12%) Frame = +2 Query: 155 SPSSDERMDTGSESFRSQD----------TPNSALSSDCDEREPDTVLRLQNPQTILRFS 304 SP+ ++G+ES + D TP S + ++ ++L+ Q+P L+ S Sbjct: 283 SPADVSNNESGNESSKEPDKEHSTPIHPTTPVSRCARPSSRQQTISILQAQSP--FLKKS 340 Query: 305 DHDKINFNDSL--IHKMSNLHLDSPKINTRPHS 397 D ++ N N ++ I+K N+H +I+ HS Sbjct: 341 DKERANLNKTMVSINKSINIHQSIHEISCPHHS 373 >SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst2|Schizosaccharomyces pombe|chr 1|||Manual Length = 1075 Score = 29.1 bits (62), Expect = 0.57 Identities = 15/40 (37%), Positives = 23/40 (57%) Frame = -1 Query: 570 VARSSSILERLRSFSSSIL*TFFGIKSGKFSSGLDRPIKG 451 V S S L+++ F +IL FG++ KFS LD+ +G Sbjct: 581 VCNSPSGLKKVEHFFKNILPLHFGLEKDKFSIFLDQVFRG 620 >SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp9|Schizosaccharomyces pombe|chr 2|||Manual Length = 778 Score = 27.5 bits (58), Expect = 1.7 Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 1/93 (1%) Frame = +2 Query: 110 QMSFTTIRTNEEDLTSPS-SDERMDTGSESFRSQDTPNSALSSDCDEREPDTVLRLQNPQ 286 + SFT + + D T S + + E+F + P + +SS P TV+ + Sbjct: 251 KFSFTEPSSEKVDNTETKFSKKTKNINDENFPN---PFNVISSYETSASPSTVIDQSSQV 307 Query: 287 TILRFSDHDKINFNDSLIHKMSNLHLDSPKINT 385 + + + + + N+ I + +L LD+PKI++ Sbjct: 308 SSIFVNKRLRKSVNNQAISRSDSLSLDTPKIDS 340 >SPAC23H4.07c |srp102||signal recognition particle receptor beta subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual Length = 227 Score = 27.5 bits (58), Expect = 1.7 Identities = 13/42 (30%), Positives = 22/42 (52%) Frame = +2 Query: 467 SSPDENFPDLIPKKVHKIEDEKDLSLSSIEDERATFLFAAEE 592 + P E L+ ++H I +EK+L L SI E + A++ Sbjct: 155 AQPAEKIQQLLKAELHNILEEKNLQLESIVSEDVDWESVADQ 196 >SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 501 Score = 26.6 bits (56), Expect = 3.0 Identities = 13/45 (28%), Positives = 23/45 (51%) Frame = +2 Query: 500 PKKVHKIEDEKDLSLSSIEDERATFLFAAEEYVKEQFGISPKTSS 634 P K ++ E+D+ LS + E + +E +K Q +SP S+ Sbjct: 356 PVKPASLQSEEDIQLSFKQPELSASSAELDEKLKSQCNVSPSPSN 400 >SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr 1|||Manual Length = 872 Score = 26.2 bits (55), Expect = 4.0 Identities = 15/68 (22%), Positives = 32/68 (47%) Frame = +2 Query: 89 NKGL*ESQMSFTTIRTNEEDLTSPSSDERMDTGSESFRSQDTPNSALSSDCDEREPDTVL 268 +KG S + +E++ SP+S + S F + ++ ++ DER P + Sbjct: 577 SKGYNSSDYDLLRTHSLDENVNSPTSISSPSSKSSPFTKTTSKDTKSATTTDER-PSDFI 635 Query: 269 RLQNPQTI 292 RL + +++ Sbjct: 636 RLNSEESV 643 >SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 1021 Score = 25.8 bits (54), Expect = 5.3 Identities = 11/29 (37%), Positives = 17/29 (58%) Frame = +2 Query: 137 NEEDLTSPSSDERMDTGSESFRSQDTPNS 223 NE+ L++ DE+ ESF+ Q+ P S Sbjct: 885 NEKGLSTEQRDEKKHAKVESFQRQEMPRS 913 >SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 751 Score = 25.4 bits (53), Expect = 7.0 Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 1/82 (1%) Frame = +2 Query: 149 LTSPSSDERMDTGSESFRSQDTPNSALSSDCDEREPDTVL-RLQNPQTILRFSDHDKINF 325 +TSP S S+ +PN++L +R P +L L+N S + Sbjct: 585 VTSPKSGAYASPSKASYNQDSSPNASLEQCFVQRSPSKMLTTLRN-----NSSTFPSLRK 639 Query: 326 NDSLIHKMSNLHLDSPKINTRP 391 N + K + L SPK + P Sbjct: 640 NAMIARKSTADSLSSPKRQSVP 661 >SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor complex associated protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 710 Score = 25.4 bits (53), Expect = 7.0 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 2/80 (2%) Frame = +2 Query: 104 ESQMSFTTIRTNEEDLTSPSSDERMDTGSESFRSQDTPNSALSSDCDEREPDTVLRLQNP 283 +S +S + N E+L S SE S N+ SSD + T + + Sbjct: 446 DSGISSENVSNNREELPSFRKRSSSSRQSEEIASLQAENAVFSSDPASNDEKTGNKKRKK 505 Query: 284 QTILRFSDHD--KINFNDSL 337 +++ D+D ++ F +SL Sbjct: 506 KSVSWKPDNDLVQVKFIESL 525 >SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 1036 Score = 25.0 bits (52), Expect = 9.2 Identities = 14/34 (41%), Positives = 16/34 (47%) Frame = +3 Query: 198 SGHRTLLTRLCPQTATSGSQTPFSVCRTLKQSSG 299 S T LT + TATS S TPF +SG Sbjct: 549 SASSTPLTSVNSTTATSASSTPFGNSTITSSASG 582 >SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr 3|||Manual Length = 828 Score = 25.0 bits (52), Expect = 9.2 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%) Frame = +2 Query: 188 SESFRSQD--TPNSALSSDCDEREPDTVLRLQNPQTILRFSDHDKI 319 SE+ RS+ T ++ LS++ D E + + P TI +DH I Sbjct: 667 SENKRSESELTMSNVLSNEGDRNEEGSEINSSQPSTINHGTDHINI 712 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,527,586 Number of Sequences: 5004 Number of extensions: 51710 Number of successful extensions: 186 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 164 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 186 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 285732116 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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