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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0972
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    30   0.25 
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    30   0.32 
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    29   0.57 
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp...    27   1.7  
SPAC23H4.07c |srp102||signal recognition particle receptor beta ...    27   1.7  
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    27   3.0  
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    26   4.0  
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    26   5.3  
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.0  
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    25   7.0  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   9.2  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    25   9.2  

>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = -1

Query: 267 RTVSGSRSSQSEDRAELGVSCDR-KDSEPVSILSSDDGDVRSSSFV-LIVVKLICDSYRP 94
           + ++GS   Q  +     + C   KD+ P+ +  S DG VR   +    + K+ CDS +P
Sbjct: 379 KILTGSTIFQGHEDCVWELFCHEVKDNNPILLSLSSDGTVRGWKYTGEQLFKIRCDSKQP 438

Query: 93  LFLS 82
           L +S
Sbjct: 439 LSMS 442


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 29.9 bits (64), Expect = 0.32
 Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 12/93 (12%)
 Frame = +2

Query: 155 SPSSDERMDTGSESFRSQD----------TPNSALSSDCDEREPDTVLRLQNPQTILRFS 304
           SP+     ++G+ES +  D          TP S  +     ++  ++L+ Q+P   L+ S
Sbjct: 283 SPADVSNNESGNESSKEPDKEHSTPIHPTTPVSRCARPSSRQQTISILQAQSP--FLKKS 340

Query: 305 DHDKINFNDSL--IHKMSNLHLDSPKINTRPHS 397
           D ++ N N ++  I+K  N+H    +I+   HS
Sbjct: 341 DKERANLNKTMVSINKSINIHQSIHEISCPHHS 373


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -1

Query: 570 VARSSSILERLRSFSSSIL*TFFGIKSGKFSSGLDRPIKG 451
           V  S S L+++  F  +IL   FG++  KFS  LD+  +G
Sbjct: 581 VCNSPSGLKKVEHFFKNILPLHFGLEKDKFSIFLDQVFRG 620


>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
           Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
 Frame = +2

Query: 110 QMSFTTIRTNEEDLTSPS-SDERMDTGSESFRSQDTPNSALSSDCDEREPDTVLRLQNPQ 286
           + SFT   + + D T    S +  +   E+F +   P + +SS      P TV+   +  
Sbjct: 251 KFSFTEPSSEKVDNTETKFSKKTKNINDENFPN---PFNVISSYETSASPSTVIDQSSQV 307

Query: 287 TILRFSDHDKINFNDSLIHKMSNLHLDSPKINT 385
           + +  +   + + N+  I +  +L LD+PKI++
Sbjct: 308 SSIFVNKRLRKSVNNQAISRSDSLSLDTPKIDS 340


>SPAC23H4.07c |srp102||signal recognition particle receptor beta
           subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 227

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 467 SSPDENFPDLIPKKVHKIEDEKDLSLSSIEDERATFLFAAEE 592
           + P E    L+  ++H I +EK+L L SI  E   +   A++
Sbjct: 155 AQPAEKIQQLLKAELHNILEEKNLQLESIVSEDVDWESVADQ 196


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +2

Query: 500 PKKVHKIEDEKDLSLSSIEDERATFLFAAEEYVKEQFGISPKTSS 634
           P K   ++ E+D+ LS  + E +      +E +K Q  +SP  S+
Sbjct: 356 PVKPASLQSEEDIQLSFKQPELSASSAELDEKLKSQCNVSPSPSN 400


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 15/68 (22%), Positives = 32/68 (47%)
 Frame = +2

Query: 89  NKGL*ESQMSFTTIRTNEEDLTSPSSDERMDTGSESFRSQDTPNSALSSDCDEREPDTVL 268
           +KG   S        + +E++ SP+S     + S  F    + ++  ++  DER P   +
Sbjct: 577 SKGYNSSDYDLLRTHSLDENVNSPTSISSPSSKSSPFTKTTSKDTKSATTTDER-PSDFI 635

Query: 269 RLQNPQTI 292
           RL + +++
Sbjct: 636 RLNSEESV 643


>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 137 NEEDLTSPSSDERMDTGSESFRSQDTPNS 223
           NE+ L++   DE+     ESF+ Q+ P S
Sbjct: 885 NEKGLSTEQRDEKKHAKVESFQRQEMPRS 913


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
 Frame = +2

Query: 149 LTSPSSDERMDTGSESFRSQDTPNSALSSDCDEREPDTVL-RLQNPQTILRFSDHDKINF 325
           +TSP S         S+    +PN++L     +R P  +L  L+N       S    +  
Sbjct: 585 VTSPKSGAYASPSKASYNQDSSPNASLEQCFVQRSPSKMLTTLRN-----NSSTFPSLRK 639

Query: 326 NDSLIHKMSNLHLDSPKINTRP 391
           N  +  K +   L SPK  + P
Sbjct: 640 NAMIARKSTADSLSSPKRQSVP 661


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
 Frame = +2

Query: 104 ESQMSFTTIRTNEEDLTSPSSDERMDTGSESFRSQDTPNSALSSDCDEREPDTVLRLQNP 283
           +S +S   +  N E+L S          SE   S    N+  SSD    +  T  + +  
Sbjct: 446 DSGISSENVSNNREELPSFRKRSSSSRQSEEIASLQAENAVFSSDPASNDEKTGNKKRKK 505

Query: 284 QTILRFSDHD--KINFNDSL 337
           +++    D+D  ++ F +SL
Sbjct: 506 KSVSWKPDNDLVQVKFIESL 525


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = +3

Query: 198 SGHRTLLTRLCPQTATSGSQTPFSVCRTLKQSSG 299
           S   T LT +   TATS S TPF        +SG
Sbjct: 549 SASSTPLTSVNSTTATSASSTPFGNSTITSSASG 582


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +2

Query: 188 SESFRSQD--TPNSALSSDCDEREPDTVLRLQNPQTILRFSDHDKI 319
           SE+ RS+   T ++ LS++ D  E  + +    P TI   +DH  I
Sbjct: 667 SENKRSESELTMSNVLSNEGDRNEEGSEINSSQPSTINHGTDHINI 712


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,527,586
Number of Sequences: 5004
Number of extensions: 51710
Number of successful extensions: 186
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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