Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0972
         (639 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,223...    31   0.77 
02_04_0404 + 22626709-22628601                                         30   1.3  
07_01_0549 + 4082672-4082731,4083424-4083489,4083628-4083674,408...    28   5.4  
01_06_0912 + 32933362-32933515,32933628-32933697,32933893-329340...    28   5.4  
12_02_0482 + 19541017-19541139,19542687-19542765,19542971-195430...    27   9.5  
06_03_0048 + 15959234-15959590,15959973-15960314                       27   9.5  
01_07_0178 + 41810795-41811409                                         27   9.5  

>11_01_0298 -
           2231063-2232015,2232124-2232798,2232918-2232946,
           2233053-2233513,2233593-2233717,2233801-2234098,
           2235004-2236234,2236562-2237233,2237329-2238539
          Length = 1884

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = +2

Query: 122 TTIRTNEEDLTSPSSDERMDTGSESFRSQDTPNSALSSDCDEREP 256
           T  R NE ++ S   DE  ++GS S  S+D  +S+ SS+C +  P
Sbjct: 264 TRQRVNESEV-STRPDESQESGSGSDASEDVESSSNSSNCTKELP 307


>02_04_0404 + 22626709-22628601
          Length = 630

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 152 TSPSSDERMDTGSESFRSQDTPNSALSSDCDERE 253
           +SPSSD   D+ S S  S  + +S+ SSD D  E
Sbjct: 412 SSPSSDSDSDSNSSSSSSSSSSSSSSSSDSDSDE 445


>07_01_0549 +
           4082672-4082731,4083424-4083489,4083628-4083674,
           4083757-4083802,4083905-4083985,4084105-4084147,
           4084258-4084307,4084392-4084473,4084538-4084587,
           4084687-4084760,4084870-4084921,4085034-4085459,
           4085816-4086403
          Length = 554

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
 Frame = +2

Query: 155 SPSSDERMDTGSESFRSQDTPNSALSSDCDEREPDTVLRLQNPQTILRFSDHDKI----- 319
           +P S   ++  S+  R   TP + L +    +  D + RL++P   +     D+I     
Sbjct: 360 TPPSKCSLERASQPTRRASTPVNMLQTPEKRQGADILTRLKSPDVSVNSPRIDRIAEFPI 419

Query: 320 -NFNDSLIHKMSNLHLDSPKI 379
            +F+D  +H  + L L  P I
Sbjct: 420 PSFDDEQLHPTTKLKLYPPSI 440


>01_06_0912 +
           32933362-32933515,32933628-32933697,32933893-32934035,
           32934127-32934637,32934693-32934729,32935254-32935350,
           32936774-32937153
          Length = 463

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -1

Query: 273 RRRTVSGSRSSQSEDRAELGVSCDRKDSEPVSILSSDDGDVRS 145
           + ++ S +   +  D  E+ V+CD+K  E V+  ++ D D RS
Sbjct: 116 KEKSSSLAEEPKKLDSQEVKVACDQKQVEEVTTTTAPDSDERS 158


>12_02_0482 +
           19541017-19541139,19542687-19542765,19542971-19543025,
           19543179-19543268,19543344-19543413,19543580-19543850,
           19543969-19544026,19544113-19544237,19544326-19544397,
           19544484-19544617
          Length = 358

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 260 TVLRLQNPQTILRFSDHDKINFNDSLIHKMSNLH 361
           T+L+L      L  SDH + +FN S  H ++ LH
Sbjct: 282 TMLQLDRTYWCLESSDHSQFHFNPS-FHALNELH 314


>06_03_0048 + 15959234-15959590,15959973-15960314
          Length = 232

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = +2

Query: 113 MSFTTIRTNEEDLTSPSSDERMDTGSESFRSQDTPNSALSSDCDEREPDTVLRLQNPQTI 292
           M    +R    D+TS  SDER+     S  ++     +L  D    E   VL  ++P+T+
Sbjct: 90  MELAFLRQTVWDVTSIMSDERLREAELSSEARFASTDSLPEDEYVVEVTEVLSHESPETL 149

Query: 293 L 295
           L
Sbjct: 150 L 150


>01_07_0178 + 41810795-41811409
          Length = 204

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +2

Query: 128 IRTNEEDLTSPSSDERMDTGSESFRSQDTPNSALSSDCDEREPDTVLR 271
           I  +E    + +S E   +  ++  ++ TP S L ++   RE + VLR
Sbjct: 45  ISRSEASSFASASSESESSSDDALMARSTPRSVLPAEISRRELEAVLR 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,548,066
Number of Sequences: 37544
Number of extensions: 309548
Number of successful extensions: 826
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)