BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0972 (639 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_25220| Best HMM Match : Ank (HMM E-Value=6.2e-11) 33 0.26 SB_23899| Best HMM Match : TNFR_c6 (HMM E-Value=7.1e-09) 30 1.4 SB_25658| Best HMM Match : FYRC (HMM E-Value=0.18) 29 2.4 SB_8607| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2 SB_5350| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2 SB_44479| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2 SB_46257| Best HMM Match : Mod_r (HMM E-Value=1.2) 28 5.6 SB_10611| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6 SB_2463| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6 SB_53793| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4 SB_50254| Best HMM Match : Vicilin_N (HMM E-Value=1.7) 28 7.4 SB_3188| Best HMM Match : Hyd_WA (HMM E-Value=2e-13) 28 7.4 SB_2653| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7 SB_26363| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7 >SB_25220| Best HMM Match : Ank (HMM E-Value=6.2e-11) Length = 744 Score = 32.7 bits (71), Expect = 0.26 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 7/54 (12%) Frame = +2 Query: 131 RTNEEDLTSPSSDERMD-------TGSESFRSQDTPNSALSSDCDEREPDTVLR 271 R + E++TS S DE+ D T +++ TPN+ALS C+ V+R Sbjct: 343 REHNEEVTSQSHDEQTDSVNDHSPTANKNNNDDTTPNTALSDKCERSSSGNVIR 396 >SB_23899| Best HMM Match : TNFR_c6 (HMM E-Value=7.1e-09) Length = 533 Score = 30.3 bits (65), Expect = 1.4 Identities = 17/37 (45%), Positives = 19/37 (51%) Frame = +2 Query: 122 TTIRTNEEDLTSPSSDERMDTGSESFRSQDTPNSALS 232 TT RT TSP R T +ES SQ TP+ A S Sbjct: 220 TTPRTPNVPPTSPEPTTRRSTSTESTSSQSTPSPASS 256 >SB_25658| Best HMM Match : FYRC (HMM E-Value=0.18) Length = 211 Score = 29.5 bits (63), Expect = 2.4 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Frame = +2 Query: 116 SFTTIRTNEEDLTSPSSDERMDTGSESFRSQDTPNSALSSDCDEREPDT-VLRL 274 S+TT+R E T+P SD + ++ S+D +A ++ RE T VLR+ Sbjct: 127 SWTTVRVIEPPQTTPQSDTVKEDQEQTEDSEDPEETAKKTEKKFREKQTPVLRM 180 >SB_8607| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 564 Score = 29.1 bits (62), Expect = 3.2 Identities = 15/36 (41%), Positives = 20/36 (55%) Frame = +2 Query: 131 RTNEEDLTSPSSDERMDTGSESFRSQDTPNSALSSD 238 RTN + P+ T SES+ S D +S+LSSD Sbjct: 501 RTNHIHMGRPAGGRATSTESESYSSGDELSSSLSSD 536 >SB_5350| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 522 Score = 29.1 bits (62), Expect = 3.2 Identities = 16/50 (32%), Positives = 24/50 (48%) Frame = +2 Query: 80 KLKNKGL*ESQMSFTTIRTNEEDLTSPSSDERMDTGSESFRSQDTPNSAL 229 K N+G SF R N+ D + SS + T +E +RSQ N ++ Sbjct: 148 KAANRGFHWLTKSFENARANQNDASQISSIDHRSTPNELWRSQHGRNGSI 197 >SB_44479| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 197 Score = 28.7 bits (61), Expect = 4.2 Identities = 14/59 (23%), Positives = 26/59 (44%) Frame = +2 Query: 137 NEEDLTSPSSDERMDTGSESFRSQDTPNSALSSDCDEREPDTVLRLQNPQTILRFSDHD 313 + +D P ER + +ES++ Q + +S + + + D L + LR D D Sbjct: 9 DSDDDEEPDDSERSSSDAESYKQQGSDDSDWGPNDESEDEDVKELLSEARGFLRLRDRD 67 >SB_46257| Best HMM Match : Mod_r (HMM E-Value=1.2) Length = 140 Score = 28.3 bits (60), Expect = 5.6 Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 1/47 (2%) Frame = +2 Query: 134 TNEEDLTSPSSDERMDT-GSESFRSQDTPNSALSSDCDEREPDTVLR 271 +N D+ +++ + D E+ S N+ L+ CD+ PDT ++ Sbjct: 5 SNNGDVQEKNTNNQGDNLNEENSESSSKENTELNEKCDDNRPDTFMK 51 >SB_10611| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1134 Score = 28.3 bits (60), Expect = 5.6 Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 7/48 (14%) Frame = +3 Query: 156 RRRQTREW-TQAPNLSGHRTLLTRLCPQTATS------GSQTPFSVCR 278 +RR+T W TQAP LS T L C A S+ PFS+ R Sbjct: 858 KRRRTPSWRTQAPALSPSATQLAACCDAAAVETRIRMYASRRPFSMLR 905 >SB_2463| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 941 Score = 28.3 bits (60), Expect = 5.6 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 1/75 (1%) Frame = +2 Query: 26 IASLFILIKIQNKQFSA*KLKNKGL*ESQMSFTTIRTNEEDLTSPSSDERMDTGSESFRS 205 I F+ NK ++ NKG+ +MS I T+E T S++ +DT S + Sbjct: 357 IIDYFMSTWASNKGIDTDEVSNKGVDTDEMSNKGIDTDEGIDTDEVSNKGVDTDEVSNKG 416 Query: 206 QDTPN-SALSSDCDE 247 DT S D DE Sbjct: 417 VDTDEVSNKGIDTDE 431 >SB_53793| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 833 Score = 27.9 bits (59), Expect = 7.4 Identities = 9/19 (47%), Positives = 14/19 (73%) Frame = -1 Query: 231 DRAELGVSCDRKDSEPVSI 175 D E GVSCD++ +PV++ Sbjct: 96 DEVEFGVSCDQRSKKPVAV 114 >SB_50254| Best HMM Match : Vicilin_N (HMM E-Value=1.7) Length = 300 Score = 27.9 bits (59), Expect = 7.4 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 5/73 (6%) Frame = +2 Query: 50 KIQNKQFSA*KLKNKGL*ESQMSFTTIRTN-----EEDLTSPSSDERMDTGSESFRSQDT 214 +IQ Q S+ K K E + T RT +ED S S+ ++ G++S ++++ Sbjct: 72 RIQAGQQSSYKEDKKPKVEHRSLVTDRRTRRSCDQQEDKGSLSNQKQQKLGNQSKQAENL 131 Query: 215 PNSALSSDCDERE 253 N +S+CD+ E Sbjct: 132 NNQKQTSECDQSE 144 >SB_3188| Best HMM Match : Hyd_WA (HMM E-Value=2e-13) Length = 1389 Score = 27.9 bits (59), Expect = 7.4 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 5/67 (7%) Frame = +2 Query: 107 SQMSFTTIRTNEE----DLTSPSSDERMDTGSESFR-SQDTPNSALSSDCDEREPDTVLR 271 S MSF+ + ++ DL SP+ + MD +E S++TP L D E P+T Sbjct: 587 SDMSFSEVESSHHLIKTDLRSPT-ELSMDPPTEGQSDSEETPPICLDKDGAEELPETSSW 645 Query: 272 LQNPQTI 292 +P+T+ Sbjct: 646 TSSPRTL 652 >SB_2653| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1298 Score = 27.5 bits (58), Expect = 9.7 Identities = 11/19 (57%), Positives = 15/19 (78%) Frame = +2 Query: 287 TILRFSDHDKINFNDSLIH 343 TILRFS ++ FNDS+I+ Sbjct: 807 TILRFSKGGEVEFNDSMIY 825 >SB_26363| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1054 Score = 27.5 bits (58), Expect = 9.7 Identities = 16/49 (32%), Positives = 23/49 (46%) Frame = +3 Query: 123 PQ*GRMKRTSHRRRQTREWTQAPNLSGHRTLLTRLCPQTATSGSQTPFS 269 PQ G+ KR R+ W Q P++ R R P+T T G + F+ Sbjct: 1005 PQ-GKRKRGRPRKPGAEIWMQTPSIWARRGDSWRDSPRTETPGERKKFT 1052 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,345,983 Number of Sequences: 59808 Number of extensions: 379873 Number of successful extensions: 1047 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 947 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1041 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1608851125 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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