Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0972
         (639 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25220| Best HMM Match : Ank (HMM E-Value=6.2e-11)                   33   0.26 
SB_23899| Best HMM Match : TNFR_c6 (HMM E-Value=7.1e-09)               30   1.4  
SB_25658| Best HMM Match : FYRC (HMM E-Value=0.18)                     29   2.4  
SB_8607| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.2  
SB_5350| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.2  
SB_44479| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_46257| Best HMM Match : Mod_r (HMM E-Value=1.2)                     28   5.6  
SB_10611| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_2463| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.6  
SB_53793| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_50254| Best HMM Match : Vicilin_N (HMM E-Value=1.7)                 28   7.4  
SB_3188| Best HMM Match : Hyd_WA (HMM E-Value=2e-13)                   28   7.4  
SB_2653| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.7  
SB_26363| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_25220| Best HMM Match : Ank (HMM E-Value=6.2e-11)
          Length = 744

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
 Frame = +2

Query: 131 RTNEEDLTSPSSDERMD-------TGSESFRSQDTPNSALSSDCDEREPDTVLR 271
           R + E++TS S DE+ D       T +++     TPN+ALS  C+      V+R
Sbjct: 343 REHNEEVTSQSHDEQTDSVNDHSPTANKNNNDDTTPNTALSDKCERSSSGNVIR 396


>SB_23899| Best HMM Match : TNFR_c6 (HMM E-Value=7.1e-09)
          Length = 533

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/37 (45%), Positives = 19/37 (51%)
 Frame = +2

Query: 122 TTIRTNEEDLTSPSSDERMDTGSESFRSQDTPNSALS 232
           TT RT     TSP    R  T +ES  SQ TP+ A S
Sbjct: 220 TTPRTPNVPPTSPEPTTRRSTSTESTSSQSTPSPASS 256


>SB_25658| Best HMM Match : FYRC (HMM E-Value=0.18)
          Length = 211

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +2

Query: 116 SFTTIRTNEEDLTSPSSDERMDTGSESFRSQDTPNSALSSDCDEREPDT-VLRL 274
           S+TT+R  E   T+P SD   +   ++  S+D   +A  ++   RE  T VLR+
Sbjct: 127 SWTTVRVIEPPQTTPQSDTVKEDQEQTEDSEDPEETAKKTEKKFREKQTPVLRM 180


>SB_8607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 564

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +2

Query: 131 RTNEEDLTSPSSDERMDTGSESFRSQDTPNSALSSD 238
           RTN   +  P+      T SES+ S D  +S+LSSD
Sbjct: 501 RTNHIHMGRPAGGRATSTESESYSSGDELSSSLSSD 536


>SB_5350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +2

Query: 80  KLKNKGL*ESQMSFTTIRTNEEDLTSPSSDERMDTGSESFRSQDTPNSAL 229
           K  N+G      SF   R N+ D +  SS +   T +E +RSQ   N ++
Sbjct: 148 KAANRGFHWLTKSFENARANQNDASQISSIDHRSTPNELWRSQHGRNGSI 197


>SB_44479| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/59 (23%), Positives = 26/59 (44%)
 Frame = +2

Query: 137 NEEDLTSPSSDERMDTGSESFRSQDTPNSALSSDCDEREPDTVLRLQNPQTILRFSDHD 313
           + +D   P   ER  + +ES++ Q + +S    + +  + D    L   +  LR  D D
Sbjct: 9   DSDDDEEPDDSERSSSDAESYKQQGSDDSDWGPNDESEDEDVKELLSEARGFLRLRDRD 67


>SB_46257| Best HMM Match : Mod_r (HMM E-Value=1.2)
          Length = 140

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +2

Query: 134 TNEEDLTSPSSDERMDT-GSESFRSQDTPNSALSSDCDEREPDTVLR 271
           +N  D+   +++ + D    E+  S    N+ L+  CD+  PDT ++
Sbjct: 5   SNNGDVQEKNTNNQGDNLNEENSESSSKENTELNEKCDDNRPDTFMK 51


>SB_10611| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1134

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
 Frame = +3

Query: 156  RRRQTREW-TQAPNLSGHRTLLTRLCPQTATS------GSQTPFSVCR 278
            +RR+T  W TQAP LS   T L   C   A         S+ PFS+ R
Sbjct: 858  KRRRTPSWRTQAPALSPSATQLAACCDAAAVETRIRMYASRRPFSMLR 905


>SB_2463| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 941

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
 Frame = +2

Query: 26  IASLFILIKIQNKQFSA*KLKNKGL*ESQMSFTTIRTNEEDLTSPSSDERMDTGSESFRS 205
           I   F+     NK     ++ NKG+   +MS   I T+E   T   S++ +DT   S + 
Sbjct: 357 IIDYFMSTWASNKGIDTDEVSNKGVDTDEMSNKGIDTDEGIDTDEVSNKGVDTDEVSNKG 416

Query: 206 QDTPN-SALSSDCDE 247
            DT   S    D DE
Sbjct: 417 VDTDEVSNKGIDTDE 431


>SB_53793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 833

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 231 DRAELGVSCDRKDSEPVSI 175
           D  E GVSCD++  +PV++
Sbjct: 96  DEVEFGVSCDQRSKKPVAV 114


>SB_50254| Best HMM Match : Vicilin_N (HMM E-Value=1.7)
          Length = 300

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
 Frame = +2

Query: 50  KIQNKQFSA*KLKNKGL*ESQMSFTTIRTN-----EEDLTSPSSDERMDTGSESFRSQDT 214
           +IQ  Q S+ K   K   E +   T  RT      +ED  S S+ ++   G++S ++++ 
Sbjct: 72  RIQAGQQSSYKEDKKPKVEHRSLVTDRRTRRSCDQQEDKGSLSNQKQQKLGNQSKQAENL 131

Query: 215 PNSALSSDCDERE 253
            N   +S+CD+ E
Sbjct: 132 NNQKQTSECDQSE 144


>SB_3188| Best HMM Match : Hyd_WA (HMM E-Value=2e-13)
          Length = 1389

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
 Frame = +2

Query: 107 SQMSFTTIRTNEE----DLTSPSSDERMDTGSESFR-SQDTPNSALSSDCDEREPDTVLR 271
           S MSF+ + ++      DL SP+ +  MD  +E    S++TP   L  D  E  P+T   
Sbjct: 587 SDMSFSEVESSHHLIKTDLRSPT-ELSMDPPTEGQSDSEETPPICLDKDGAEELPETSSW 645

Query: 272 LQNPQTI 292
             +P+T+
Sbjct: 646 TSSPRTL 652


>SB_2653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1298

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 287 TILRFSDHDKINFNDSLIH 343
           TILRFS   ++ FNDS+I+
Sbjct: 807 TILRFSKGGEVEFNDSMIY 825


>SB_26363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1054

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +3

Query: 123  PQ*GRMKRTSHRRRQTREWTQAPNLSGHRTLLTRLCPQTATSGSQTPFS 269
            PQ G+ KR   R+     W Q P++   R    R  P+T T G +  F+
Sbjct: 1005 PQ-GKRKRGRPRKPGAEIWMQTPSIWARRGDSWRDSPRTETPGERKKFT 1052


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,345,983
Number of Sequences: 59808
Number of extensions: 379873
Number of successful extensions: 1047
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)