Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0972
(639 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68104-8|CAA92117.1| 1077|Caenorhabditis elegans Hypothetical pr... 33 0.17
Z66563-4|CAA91470.1| 1077|Caenorhabditis elegans Hypothetical pr... 33 0.17
AF435953-1|AAL30829.1| 1077|Caenorhabditis elegans eIF2 alpha ki... 33 0.17
AF193341-1|AAF61201.1| 1077|Caenorhabditis elegans eukaryotic tr... 33 0.17
U28730-7|AAA68258.2| 665|Caenorhabditis elegans Abnormal cell l... 32 0.40
AF275253-1|AAG28037.1| 665|Caenorhabditis elegans LIN-23 protein. 32 0.40
AF026209-14|AAB71280.1| 366|Caenorhabditis elegans Hypothetical... 29 2.8
U37430-4|AAB52675.1| 1616|Caenorhabditis elegans Vitellogenin st... 28 4.9
AC024799-10|AAK72319.1| 495|Caenorhabditis elegans Cytochrome p... 27 8.6
>Z68104-8|CAA92117.1| 1077|Caenorhabditis elegans Hypothetical
protein F46C3.1 protein.
Length = 1077
Score = 33.1 bits (72), Expect = 0.17
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +2
Query: 122 TTIRTNEEDLTSPSSDERMDTGSESFRSQDTPNSALSSDCDEREP 256
TT EE + SDE DT +S S ++P+S+ S D+ EP
Sbjct: 770 TTAELKEESVAFSESDEESDTTEDSSSSDESPSSSSGSSIDD-EP 813
>Z66563-4|CAA91470.1| 1077|Caenorhabditis elegans Hypothetical
protein F46C3.1 protein.
Length = 1077
Score = 33.1 bits (72), Expect = 0.17
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +2
Query: 122 TTIRTNEEDLTSPSSDERMDTGSESFRSQDTPNSALSSDCDEREP 256
TT EE + SDE DT +S S ++P+S+ S D+ EP
Sbjct: 770 TTAELKEESVAFSESDEESDTTEDSSSSDESPSSSSGSSIDD-EP 813
>AF435953-1|AAL30829.1| 1077|Caenorhabditis elegans eIF2 alpha
kinase protein.
Length = 1077
Score = 33.1 bits (72), Expect = 0.17
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +2
Query: 122 TTIRTNEEDLTSPSSDERMDTGSESFRSQDTPNSALSSDCDEREP 256
TT EE + SDE DT +S S ++P+S+ S D+ EP
Sbjct: 770 TTAELKEESVAFSESDEESDTTEDSSSSDESPSSSSGSSIDD-EP 813
>AF193341-1|AAF61201.1| 1077|Caenorhabditis elegans eukaryotic
translation initiationfactor 2 alpha kinase PEK protein.
Length = 1077
Score = 33.1 bits (72), Expect = 0.17
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +2
Query: 122 TTIRTNEEDLTSPSSDERMDTGSESFRSQDTPNSALSSDCDEREP 256
TT EE + SDE DT +S S ++P+S+ S D+ EP
Sbjct: 770 TTAELKEESVAFSESDEESDTTEDSSSSDESPSSSSGSSIDD-EP 813
>U28730-7|AAA68258.2| 665|Caenorhabditis elegans Abnormal cell
lineage protein 23 protein.
Length = 665
Score = 31.9 bits (69), Expect = 0.40
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Frame = +2
Query: 221 SALSSDCDEREPDTVLRLQNPQ----TILRFSDHDKINFNDSLIHKMSNLHLDSPKINTR 388
S + DE +P ++ LQ + +L++S+H++++F D ++H++S+ L R
Sbjct: 17 SLTEGEHDEGKPLSIDYLQGHEGLIEEVLKWSEHEQLDFMDKIVHRLSHYQLGKVDNFIR 76
Query: 389 P 391
P
Sbjct: 77 P 77
>AF275253-1|AAG28037.1| 665|Caenorhabditis elegans LIN-23 protein.
Length = 665
Score = 31.9 bits (69), Expect = 0.40
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Frame = +2
Query: 221 SALSSDCDEREPDTVLRLQNPQ----TILRFSDHDKINFNDSLIHKMSNLHLDSPKINTR 388
S + DE +P ++ LQ + +L++S+H++++F D ++H++S+ L R
Sbjct: 17 SLTEGEHDEGKPLSIDYLQGHEGLIEEVLKWSEHEQLDFMDKIVHRLSHYQLGKVDNFIR 76
Query: 389 P 391
P
Sbjct: 77 P 77
>AF026209-14|AAB71280.1| 366|Caenorhabditis elegans Hypothetical
protein C05E4.12 protein.
Length = 366
Score = 29.1 bits (62), Expect = 2.8
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Frame = +2
Query: 119 FTTIRTNEEDLTSPSSDERMDTGSE---SFRSQDTPNSALSSDCDEREPDTVLRLQNPQT 289
FT I E D+ +S E + S+ SF + P S + + +E E D +L+ Q
Sbjct: 2 FTPI-IEELDVLEETSREDLRQNSQYSISFGVEHNPESFRNFESEEVEQDVDQKLRIEQI 60
Query: 290 IL-RFSDHDKINFNDSLIHKMSNLH 361
L + + +FN+++IHK+ +H
Sbjct: 61 ALDKIALLVNQSFNNAIIHKIKKMH 85
>U37430-4|AAB52675.1| 1616|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 1 protein.
Length = 1616
Score = 28.3 bits (60), Expect = 4.9
Identities = 21/66 (31%), Positives = 35/66 (53%)
Frame = +2
Query: 104 ESQMSFTTIRTNEEDLTSPSSDERMDTGSESFRSQDTPNSALSSDCDEREPDTVLRLQNP 283
+ Q+++T IR ++ + + S + D +E RS+ SS+C E E DTV L P
Sbjct: 184 DCQVAYTVIREQKKTIITKSIN--FDKCTE--RSEIAYGLRYSSECPECEKDTV--LIRP 237
Query: 284 QTILRF 301
QT+ +
Sbjct: 238 QTVYTY 243
>AC024799-10|AAK72319.1| 495|Caenorhabditis elegans Cytochrome p450
family protein33C11 protein.
Length = 495
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +2
Query: 473 PDENFPDLIPKKVHKIEDEKDLSLSSIEDERATFLFAAEEYV 598
P ++ DLI +K H D + + I+D RA + AEEY+
Sbjct: 226 PGKSLEDLIAEKRH---DYYNFFYAQIQDHRAKINYQAEEYL 264
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,898,043
Number of Sequences: 27780
Number of extensions: 286563
Number of successful extensions: 973
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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