Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0972
(639 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g42723.1 68416.m04459 hypothetical protein 30 1.1
At4g16780.1 68417.m02535 homeobox-leucine zipper protein 4 (HAT4... 30 1.5
At5g06570.2 68418.m00742 expressed protein similar to PrMC3 [Pin... 29 2.6
At5g06570.1 68418.m00741 expressed protein similar to PrMC3 [Pin... 29 2.6
At4g24680.1 68417.m03533 expressed protein 29 2.6
At5g23150.1 68418.m02707 PWWP domain-containing protein identica... 29 3.4
At4g13430.1 68417.m02096 aconitase family protein / aconitate hy... 29 3.4
At3g59150.1 68416.m06594 F-box family protein contains F-box dom... 29 3.4
At3g22770.1 68416.m02871 F-box family protein-related contains T... 28 6.0
At1g68580.2 68414.m07836 agenet domain-containing protein / brom... 28 6.0
At1g68580.1 68414.m07835 agenet domain-containing protein / brom... 28 6.0
At1g56350.1 68414.m06479 peptide chain release factor, putative ... 27 7.9
>At3g42723.1 68416.m04459 hypothetical protein
Length = 806
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -1
Query: 270 RRTVSGSRSSQSEDRAELGVSCDRKDSEPVSILSSDDGDVRSS 142
RR+ SG S S++ ++ GV RK E S DGD+RSS
Sbjct: 122 RRSFSGYYGSDSQESSD-GVVSRRKSWERKRYRESKDGDIRSS 163
>At4g16780.1 68417.m02535 homeobox-leucine zipper protein 4 (HAT4) /
HD-ZIP protein 4 SP|Q05466|HAT4_ARATH Homeobox-leucine
zipper protein HAT4 (HD-ZIP protein 4) (SP:Q05466)
[Arabidopsis thaliana] (HD-ZIP homeotic protein Athb-2
Length = 284
Score = 29.9 bits (64), Expect = 1.5
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Frame = +2
Query: 122 TTIRTNEED--LTSPSSDERMDTGSESFRSQDTP---NSALSSDCDEREPDTVLRLQNPQ 286
+T +ED ++SP+S TG S R +DT + +S D D LRL Q
Sbjct: 78 STAEYGDEDAGVSSPNSTVSSSTGKRSEREEDTDPQGSRGISDDEDGDNSRKKLRLSKDQ 137
Query: 287 TIL---RFSDHDKIN 322
+ + F DH +N
Sbjct: 138 SAILEETFKDHSTLN 152
>At5g06570.2 68418.m00742 expressed protein similar to PrMC3 [Pinus
radiata] GI:5487873
Length = 329
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = +2
Query: 260 TVLRLQNPQTILR---FSDHDKINFNDSLIHKMSNLHL 364
TVLR ++ I + F ++ + F DS+ HK +NLHL
Sbjct: 25 TVLRSESIDLITQQIPFKNNQTVLFKDSIYHKPNNLHL 62
>At5g06570.1 68418.m00741 expressed protein similar to PrMC3 [Pinus
radiata] GI:5487873
Length = 329
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = +2
Query: 260 TVLRLQNPQTILR---FSDHDKINFNDSLIHKMSNLHL 364
TVLR ++ I + F ++ + F DS+ HK +NLHL
Sbjct: 25 TVLRSESIDLITQQIPFKNNQTVLFKDSIYHKPNNLHL 62
>At4g24680.1 68417.m03533 expressed protein
Length = 1480
Score = 29.1 bits (62), Expect = 2.6
Identities = 20/70 (28%), Positives = 33/70 (47%)
Frame = +2
Query: 107 SQMSFTTIRTNEEDLTSPSSDERMDTGSESFRSQDTPNSALSSDCDEREPDTVLRLQNPQ 286
S S TT+ TN E + D+ +DT ES R P S +S+D + + T+ L +
Sbjct: 695 SGSSHTTLATNTESFREVNVDDSLDT--ESIR---RPGSGISADPKDNQRSTMRELARQR 749
Query: 287 TILRFSDHDK 316
R + ++
Sbjct: 750 AQQRQKEEEE 759
>At5g23150.1 68418.m02707 PWWP domain-containing protein identical
to cDNA putative transcription factor (HUA2) GI:4868119;
contains Pfam profile PF00855: PWWP domain
Length = 1392
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 107 SQMSFTTIRTNEEDLTSPSSDERMDTGSESFRSQDTPNSALS 232
S+++ + R EDL++ D + GS +F S TP+SA S
Sbjct: 621 SRLNDSGSRDMSEDLSAAMLDLNREKGSATFTSAKTPDSAAS 662
>At4g13430.1 68417.m02096 aconitase family protein / aconitate
hydratase family protein contains Pfam profile PF00330:
Aconitase family (aconitate hydratase
Length = 509
Score = 28.7 bits (61), Expect = 3.4
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = +2
Query: 209 DTPNSALSSDCDEREPDTVLRLQNPQTILRFSDHDKINFNDSLIHKMSNLHLDSP 373
DTP S C DT RL PQ + ++ NF + HK ++L SP
Sbjct: 438 DTPASPSCGACLGGPADTYARLNEPQVCVSTTNR---NFPGRMGHKEGQIYLASP 489
>At3g59150.1 68416.m06594 F-box family protein contains F-box domain
Pfam:PF00646
Length = 509
Score = 28.7 bits (61), Expect = 3.4
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Frame = +2
Query: 233 SDCDEREPDTVLRLQNPQTI-LRFSD-----HDKINFNDSLIHKMSNLHLDSPKINTRPH 394
SD D P + P + L +SD ++ + F DSL+ +LHL + +I +P+
Sbjct: 262 SDDDSSAPKPCVSFDTPSLVYLDYSDMVADKYENLKF-DSLVEARLDLHLTAFQIMRKPN 320
Query: 395 SLGI 406
++GI
Sbjct: 321 NIGI 324
>At3g22770.1 68416.m02871 F-box family protein-related contains
TIGRFAM TIGR01640: F-box protein interaction domain
Length = 327
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +2
Query: 479 ENFPDLIPKKVHKIEDEKDLSLSSIEDERATFLFAAEEYVKEQFGISPK 625
E F L+P +E E LS+S++ DE+ L+ + + + ++ K
Sbjct: 187 ETFGPLLPLPFQFVESEDALSVSNVRDEQLAVLYQPWDTLMMEIWVTSK 235
>At1g68580.2 68414.m07836 agenet domain-containing protein /
bromo-adjacent homology (BAH) domain-containing protein
contains Pfam profile PF01426: BAH domain and PF05641:
Agenet domain
Length = 648
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -1
Query: 546 ERLRSFSSSIL*TFFGIKSGKFSSGLDRPIKGCFVVRVR 430
E LR + SIL +F G ++ GL P+ GC +R R
Sbjct: 275 EMLRYLNVSILKSFEGAQAPGTDPGLKAPLVGCVGIRSR 313
>At1g68580.1 68414.m07835 agenet domain-containing protein /
bromo-adjacent homology (BAH) domain-containing protein
contains Pfam profile PF01426: BAH domain and PF05641:
Agenet domain
Length = 492
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -1
Query: 546 ERLRSFSSSIL*TFFGIKSGKFSSGLDRPIKGCFVVRVR 430
E LR + SIL +F G ++ GL P+ GC +R R
Sbjct: 275 EMLRYLNVSILKSFEGAQAPGTDPGLKAPLVGCVGIRSR 313
>At1g56350.1 68414.m06479 peptide chain release factor, putative
similar to SP|P28353 Peptide chain release factor 2
(RF-2). {Salmonella typhi}; contains Pfam profiles
PF00472: Peptidyl-tRNA hydrolase domain, PF03462: PCRF
domain
Length = 482
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -1
Query: 570 VARSSSILERLRSFSSSIL*TFFGIKSGKFSS 475
V SSS+L R+FSS+ ++FG GK S+
Sbjct: 28 VDSSSSVLVSRRTFSSTPALSYFGFNYGKISN 59
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,104,834
Number of Sequences: 28952
Number of extensions: 269427
Number of successful extensions: 822
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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