Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0970
         (510 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8IKR4 Cluster: Putative uncharacterized protein; n=1; ...    45   0.001
UniRef50_Q7RM15 Cluster: Putative uncharacterized protein PY0237...    40   0.043
UniRef50_Q09F08 Cluster: Ymf77; n=1; Tetrahymena pigmentosa|Rep:...    33   2.8  
UniRef50_A5BLH5 Cluster: Putative uncharacterized protein; n=1; ...    33   5.0  
UniRef50_Q6CQY6 Cluster: Similar to sgd|S0002738 Saccharomyces c...    32   6.6  

>UniRef50_Q8IKR4 Cluster: Putative uncharacterized protein; n=1;
            Plasmodium falciparum 3D7|Rep: Putative uncharacterized
            protein - Plasmodium falciparum (isolate 3D7)
          Length = 2391

 Score = 44.8 bits (101), Expect = 0.001
 Identities = 23/67 (34%), Positives = 36/67 (53%)
 Frame = +1

Query: 265  IQMCLYVVKNFSRYVYLLDENKTIF*ITLDILVLCLDDIFVALIVTHYIYSLYTSTGLFY 444
            I +CLY++K     +Y  DE+  +   +  +L+LC+D I++  I  +YIY L      F 
Sbjct: 1525 IHLCLYIIKAKVNSIYYYDEDVVLHTPSSRLLLLCIDQIYI--IYENYIYHLCKKRYFFN 1582

Query: 445  ILYNRLL 465
             LYN  L
Sbjct: 1583 FLYNIFL 1589


>UniRef50_Q7RM15 Cluster: Putative uncharacterized protein PY02373;
            n=9; cellular organisms|Rep: Putative uncharacterized
            protein PY02373 - Plasmodium yoelii yoelii
          Length = 2240

 Score = 39.5 bits (88), Expect = 0.043
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
 Frame = +1

Query: 265  IQMCLYVVKNFSRYVYLLDENKTIF*I-TLDILVLCLDDIFVALIVTHYIYSLYTSTGLF 441
            I++C Y++K     +Y  D+  T+    +  +++LC+D I++  I  +YIY L      F
Sbjct: 1425 IEICFYIIKTKINSIYYYDDENTLPNTPSSRLILLCIDQIYI--IYENYIYHLCKKRYFF 1482

Query: 442  YILYNRLL 465
              LYN  L
Sbjct: 1483 NYLYNFFL 1490


>UniRef50_Q09F08 Cluster: Ymf77; n=1; Tetrahymena pigmentosa|Rep:
           Ymf77 - Tetrahymena pigmentosa
          Length = 1260

 Score = 33.5 bits (73), Expect = 2.8
 Identities = 18/78 (23%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
 Frame = +1

Query: 244 VLIDIIRIQMCLYVVKNFSRYVYLLDENKTIF*ITLDILVLCLDDIFVALI-------VT 402
           + + +I I + +Y  K  ++Y+Y++  N  I+ I  + ++L  ++I   +        + 
Sbjct: 264 IKLSLIYIYLYIYSNKYINKYIYIIFNNIYIYIIKYNFIILNNNNIIKIINNNNIINNIN 323

Query: 403 HYIYSLYTSTGLFYILYN 456
           +Y+++ Y    +F ILYN
Sbjct: 324 YYLFNKYNYIDIFNILYN 341


>UniRef50_A5BLH5 Cluster: Putative uncharacterized protein; n=1;
           Vitis vinifera|Rep: Putative uncharacterized protein -
           Vitis vinifera (Grape)
          Length = 466

 Score = 32.7 bits (71), Expect = 5.0
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
 Frame = +3

Query: 126 YWNRICLFLSLNNDRGFVLPILLI*TTQLCISMNSRV--PNSLDR--YHTDPNVFV 281
           +W+R  +  S ++ R F+LPI  +    LC +M  RV  P+S  R   HT P++FV
Sbjct: 184 FWDRTYINQS-SSYRSFILPIRSVRRPGLCFTMTFRVTFPDSAFRAIVHTHPDIFV 238


>UniRef50_Q6CQY6 Cluster: Similar to sgd|S0002738 Saccharomyces
           cerevisiae YDR325w YCG1 Yeast Condensin G; n=1;
           Kluyveromyces lactis|Rep: Similar to sgd|S0002738
           Saccharomyces cerevisiae YDR325w YCG1 Yeast Condensin G
           - Kluyveromyces lactis (Yeast) (Candida sphaerica)
          Length = 1058

 Score = 32.3 bits (70), Expect = 6.6
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +3

Query: 336 FLDHSRHTRIMFRRYLRCVNRDTLYI*FIYFYWVILYTL 452
           +  H RH  +++R YL+CV ++   I  ++ YW I  T+
Sbjct: 94  YAGHRRHVAVLYRIYLKCVEQE---ISDVFHYWFIKMTV 129


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 415,814,825
Number of Sequences: 1657284
Number of extensions: 7464669
Number of successful extensions: 16269
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16259
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 30946432294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)