Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0970
         (510 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    28   0.71 
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    28   0.93 
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    26   3.8  
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    26   3.8  
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    25   8.7  
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    25   8.7  
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma...    25   8.7  

>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 28.3 bits (60), Expect = 0.71
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -1

Query: 342 LENSFILIQQIDVSAEILDNVQTHLDPYDI 253
           + NS   I  IDV+ E L N Q HL PY +
Sbjct: 451 ISNSRNFIDCIDVTREFLKNGQLHLIPYTL 480


>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 468

 Score = 27.9 bits (59), Expect = 0.93
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 360 EYV*SDLENSFILIQQIDVSAEILDNVQT-HLDPYDIDQDY 241
           E+V SDLE+ F    + DV    +DN  T  L P + D D+
Sbjct: 276 EFVGSDLESDFSGPGEYDVDDGFIDNRATSQLSPVESDDDF 316


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 358 LVLCLDDIFVALIVTHYIYSLYTSTGLFYI 447
           L  CLDDI   LI+  ++      T LFY+
Sbjct: 291 LEACLDDIDKGLILNDHVLEKTGRTSLFYL 320


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 201 TTQLCISMNSRVPNSLDRYH 260
           T+QLC++  SR PN++  +H
Sbjct: 21  TSQLCVAYLSRYPNNIGIHH 40


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 225 NSRVPNSLDRYHTDPNVFVRCQEFQQIRLSVG 320
           N +  + +DRY  DP  F++  E  +I    G
Sbjct: 267 NRQFQSDIDRYRKDPEGFMKPAELNEIPKPAG 298


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 370 LDDIFVALIVTHYIYSLYTSTGLFYILYNRLLSFI 474
           L  IF A +V   + +LY  TG FY + N +LS +
Sbjct: 461 LGGIFTAGVV---VLALYCLTGAFYYIPNAVLSAV 492


>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 614

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 15 TNKELFTNLFDSNKLDIDG 71
          TN+E+ T     NKLD+DG
Sbjct: 14 TNEEILTLTDQFNKLDVDG 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,836,970
Number of Sequences: 5004
Number of extensions: 34903
Number of successful extensions: 103
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)