Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0970
         (510 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88176-1|AAO91741.1|  459|Caenorhabditis elegans Hypothetical pr...    30   0.85 
Z80215-14|CAI79138.1|  662|Caenorhabditis elegans Hypothetical p...    27   7.9  
Z80215-13|CAI79137.1|  640|Caenorhabditis elegans Hypothetical p...    27   7.9  
Z80215-12|CAB02277.1|  652|Caenorhabditis elegans Hypothetical p...    27   7.9  

>U88176-1|AAO91741.1|  459|Caenorhabditis elegans Hypothetical
           protein F18F11.5 protein.
          Length = 459

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 20/62 (32%), Positives = 28/62 (45%)
 Frame = +3

Query: 81  SYAFPGGDCYFIC*RYWNRICLFLSLNNDRGFVLPILLI*TTQLCISMNSRVPNSLDRYH 260
           S A   G  +F     +N I +    + + GFV+ I LI    + +       NSLDRYH
Sbjct: 331 SLAAVAGGVFFAIFLIYNGIQIACQCSLNEGFVVLIALILLPIIILLTTLCCNNSLDRYH 390

Query: 261 TD 266
            D
Sbjct: 391 AD 392


>Z80215-14|CAI79138.1|  662|Caenorhabditis elegans Hypothetical
           protein C36B1.12c protein.
          Length = 662

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +1

Query: 229 QEYLIVLIDIIRIQMCLYVVK 291
           Q Y  +L+D+I + +C++V+K
Sbjct: 392 QPYAFILLDVINMALCMHVLK 412


>Z80215-13|CAI79137.1|  640|Caenorhabditis elegans Hypothetical
           protein C36B1.12b protein.
          Length = 640

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +1

Query: 229 QEYLIVLIDIIRIQMCLYVVK 291
           Q Y  +L+D+I + +C++V+K
Sbjct: 392 QPYAFILLDVINMALCMHVLK 412


>Z80215-12|CAB02277.1|  652|Caenorhabditis elegans Hypothetical
           protein C36B1.12a protein.
          Length = 652

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +1

Query: 229 QEYLIVLIDIIRIQMCLYVVK 291
           Q Y  +L+D+I + +C++V+K
Sbjct: 392 QPYAFILLDVINMALCMHVLK 412


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,903,086
Number of Sequences: 27780
Number of extensions: 186890
Number of successful extensions: 397
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)