Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0968
         (756 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28737-5|AAA68274.1|  684|Caenorhabditis elegans Na/h exchanger ...    28   8.2  
U28737-4|AAM48522.1|  749|Caenorhabditis elegans Na/h exchanger ...    28   8.2  
AF497827-1|AAM18105.1|  684|Caenorhabditis elegans putative Na-H...    28   8.2  
AF497826-1|AAM18104.1|  749|Caenorhabditis elegans putative Na-H...    28   8.2  

>U28737-5|AAA68274.1|  684|Caenorhabditis elegans Na/h exchanger
           protein 4, isoform b protein.
          Length = 684

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 424 FLLS*NSYLPSSEFIRSL-MPKRFKNDLAAGLR 519
           FL+S N+YLP+ E  R+L +PK     L  G R
Sbjct: 474 FLVSENTYLPTDETFRNLGLPKAVSTALRIGER 506


>U28737-4|AAM48522.1|  749|Caenorhabditis elegans Na/h exchanger
           protein 4, isoform a protein.
          Length = 749

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 424 FLLS*NSYLPSSEFIRSL-MPKRFKNDLAAGLR 519
           FL+S N+YLP+ E  R+L +PK     L  G R
Sbjct: 539 FLVSENTYLPTDETFRNLGLPKAVSTALRIGER 571


>AF497827-1|AAM18105.1|  684|Caenorhabditis elegans putative Na-H
           exchanger isoform 4b protein.
          Length = 684

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 424 FLLS*NSYLPSSEFIRSL-MPKRFKNDLAAGLR 519
           FL+S N+YLP+ E  R+L +PK     L  G R
Sbjct: 474 FLVSENTYLPTDETFRNLGLPKAVSTALRIGER 506


>AF497826-1|AAM18104.1|  749|Caenorhabditis elegans putative Na-H
           exchanger isoform 4a protein.
          Length = 749

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 424 FLLS*NSYLPSSEFIRSL-MPKRFKNDLAAGLR 519
           FL+S N+YLP+ E  R+L +PK     L  G R
Sbjct: 539 FLVSENTYLPTDETFRNLGLPKAVSTALRIGER 571


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,509,681
Number of Sequences: 27780
Number of extensions: 302720
Number of successful extensions: 480
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)