Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0966
         (812 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    33   0.004
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    23   2.2  
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    22   6.7  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 32.7 bits (71), Expect = 0.004
 Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
 Frame = -2

Query: 772 VLYLNFIVQCLSLIIRAHYCFTVSIVMVHVSSVY--F*ISKLIFEFNSVNFVFVTGF*RC 599
           + Y  FI+  +  ++  +Y +   I+++ V   Y  F I  +   F    + FV      
Sbjct: 84  LFYCPFIIFTVHFLLCTYYFYYAFIILLCVYYFYYAFIIFTVHLLFLLCIYYFVVPLFFL 143

Query: 598 LSCHIL*CIFDIVIF*VNFMNCFIYFVIKFVIFT-GFLFC 482
           L  +   C F I    + F+ C  +F   F+IFT   LFC
Sbjct: 144 LCIYYFYCAFIIFTVHLLFLLCIYHFFCAFIIFTMHLLFC 183



 Score = 31.9 bits (69), Expect = 0.006
 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
 Frame = -1

Query: 617 YRFLKMFKLPYTVMYF*YCYILG*FYELFY-----LFCNKICHFYWFSFLWSLHNGIFII 453
           Y  L +  LP  + YF   +I+   + LFY     L C  I +FY+   L+++H  + + 
Sbjct: 201 YFTLHLLFLP-CIYYFYSAFIIFTIHLLFYCVLIILLC--IYYFYYAFILFTVHLLLLVC 257

Query: 452 NKFYYYPH*LWNCGY 408
             ++YY H L+ C +
Sbjct: 258 IYYFYYMHLLFCCAF 272



 Score = 27.1 bits (57), Expect = 0.18
 Identities = 23/112 (20%), Positives = 48/112 (42%), Gaps = 2/112 (1%)
 Frame = -2

Query: 811 FSKCIF*MCIDT*VLYLNFIVQCLSLIIRAHYCFTVSIVMVHVSSVYF*ISKLIFEFNSV 632
           F  CI+       +  ++ +  C+ +I+   Y F  + ++    +V+  +   I+ F  +
Sbjct: 208 FLPCIYYFYSAFIIFTIHLLFYCVLIILLCIYYFYYAFILF---TVHLLLLVCIYYFYYM 264

Query: 631 NFVFVTGF*RCLSCHIL*--CIFDIVIF*VNFMNCFIYFVIKFVIFTGFLFC 482
           + +F   F    + H+L   CI+      +  + C  YF   F+IF    +C
Sbjct: 265 HLLFCCAF-IIFTMHLLFLLCIYYFYCALIILL-CIYYFCRAFIIFPTHFYC 314


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -2

Query: 538 NCFIYFVIKFVIFTGFLFCGRYTMASS*LTNFTTTHINS 422
           N + +FV+K V+F  +   G     +   T+F  T +NS
Sbjct: 136 NFYFWFVLKQVMFLCYSTYGIQVFGTMQRTSFFKTFLNS 174


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/46 (21%), Positives = 19/46 (41%)
 Frame = -1

Query: 566 YCYILG*FYELFYLFCNKICHFYWFSFLWSLHNGIFIINKFYYYPH 429
           +  +LG  Y   Y+        Y  + +  + N + +I + YY  H
Sbjct: 225 FVVLLGDLYVTLYIILTNNQAKYCTTLIGLIKNCVIVIFELYYLSH 270


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,362
Number of Sequences: 336
Number of extensions: 4115
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22206566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)