Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0966
(812 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2 |Schizosa... 29 0.79
SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces po... 27 2.4
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M... 27 3.2
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 27 3.2
SPAC23C4.16c |atg15||triacylglycerol lipase Atg15 |Schizosacchar... 27 4.2
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 4.2
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo... 26 5.5
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|... 26 7.3
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom... 26 7.3
>SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 29.1 bits (62), Expect = 0.79
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 133 FWRLDTCNCTEDSIERDYRYH 71
FWR N TED ++YRY+
Sbjct: 330 FWRKSFTNVTEDKFNKEYRYN 350
>SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 216
Score = 27.5 bits (58), Expect = 2.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 265 SQCSPIRKDRLLCCTFH*SSHCQRRG 188
++ SP+ R CC H +S CQR G
Sbjct: 136 AELSPVTDFREACCRQHETSECQRGG 161
>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 757
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 163 AERIDKKYCLFADNENFSEMYNIADDPYELENIVNHVFPAVKYW 294
+E I+K Y +N+ SE N+ +D N+V+ + YW
Sbjct: 130 SEHIEKSYLKAVENDGQSEPVNVNEDYLYSVNVVSRELSPI-YW 172
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 27.1 bits (57), Expect = 3.2
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +1
Query: 61 PWKYDSGNLAQCYPQYSCKCQDAKNNTYACIRHIAERIDKKYCLFADNENFSE 219
PWK + YP + + +D+ N+++ CI +I E + L+ E+F E
Sbjct: 668 PWKSGTTLRNLIYPYDTIELEDSWNSSWGCIPNI-ELDPYAFKLYVPEEDFIE 719
>SPAC23C4.16c |atg15||triacylglycerol lipase Atg15
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 424
Score = 26.6 bits (56), Expect = 4.2
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = -2
Query: 136 CFWRLDTCN--CTEDSIERDYRYHT-SKDILY 50
C+ TC+ C ED ++ D RY++ S DI Y
Sbjct: 235 CYKNTYTCSQTCLEDEVQDDSRYYSASLDIFY 266
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.6 bits (56), Expect = 4.2
Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +2
Query: 17 NTTAKARTDLWIKNVLGSMIAVISLNAILSTVASVKTPKTIH--TPVSDTSRSESTRNIA 190
+T T + +VL S + S ++IL++ + + ++ TP++ ++ S+ I
Sbjct: 1215 STVLNTSTPITSSSVLNSSTPITS-SSILNSSTPITSSSVLNSSTPITSSTVVNSSTPIT 1273
Query: 191 SSLTMRTSVKCTT 229
SS + TS+ T+
Sbjct: 1274 SSTALNTSIPITS 1286
Score = 25.4 bits (53), Expect = 9.7
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +2
Query: 17 NTTAKARTDLWIKNVLGSMIAVISLNAILSTVASVKTPKTIHTPVSDTS--RSESTRNIA 190
+T + T + +VL S + S STV + TP T T V+ ++ S S N +
Sbjct: 807 STVLNSSTPITSSSVLNSSTPITS-----STVVNTSTPITSSTVVNSSTPITSSSVLNSS 861
Query: 191 SSLTMRTSVKCTT 229
+ +T T++ +T
Sbjct: 862 TPITSSTALNTST 874
>SPAC3C7.07c |||arginine-tRNA protein transferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +1
Query: 202 NENFSEMYNIADDPYELENIVNHVFPAVKYWYREI 306
+ENF+ NI + + +++++ FP VK+W+ EI
Sbjct: 313 SENFA---NIGNSTFPTRHVLSY-FPQVKHWFVEI 343
>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 623
Score = 25.8 bits (54), Expect = 7.3
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -1
Query: 812 VFEMHILNVH*HLSSVSQFYSAMSVLNNQSALLLHSINSNGSCFK 678
+ E + NV LS V + ++N + LL HS+NS+ +C K
Sbjct: 318 ITEEKLRNVTTVLSDVQSYLK--KTVDNNTVLLGHSLNSDLNCLK 360
>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1466
Score = 25.8 bits (54), Expect = 7.3
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = -2
Query: 124 LDTCNCTEDSIERDYRYHTSKD 59
L C CT E DY Y KD
Sbjct: 1271 LSKCECTRADFECDYNYRRLKD 1292
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,101,662
Number of Sequences: 5004
Number of extensions: 63282
Number of successful extensions: 234
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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