Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0966
(812 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32744| Best HMM Match : Sulfatase (HMM E-Value=0) 71 8e-13
SB_53429| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.039
SB_31645| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.64
SB_18644| Best HMM Match : RVT_1 (HMM E-Value=0.033) 31 0.84
SB_47472| Best HMM Match : zf-CXXC (HMM E-Value=5.9) 31 1.1
SB_25088| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_32603| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_57863| Best HMM Match : Ribosomal_S21 (HMM E-Value=2.8) 29 4.5
SB_51779| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_25298| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_30727| Best HMM Match : DUF658 (HMM E-Value=0.39) 29 5.9
SB_19665| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
SB_24816| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
SB_17495| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
SB_30264| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
>SB_32744| Best HMM Match : Sulfatase (HMM E-Value=0)
Length = 485
Score = 71.3 bits (167), Expect = 8e-13
Identities = 41/110 (37%), Positives = 61/110 (55%)
Frame = +1
Query: 4 NMLIEYYGEGKDGSVDKECPWKYDSGNLAQCYPQYSCKCQDAKNNTYACIRHIAERIDKK 183
+ L+E+ GEG GS+D CP D G +A C P +C C+D+ NNTY+C+R + D
Sbjct: 377 DFLVEHLGEGH-GSIDG-CP-ALDPG-MADCTP--NCVCEDSWNNTYSCVRTLTTSRDFM 430
Query: 184 YCLFADNENFSEMYNIADDPYELENIVNHVFPAVKYWYREILTRMLTCSG 333
+C F D+E F E Y++ DP +L N+V ++ L + CSG
Sbjct: 431 FCEFRDSEAFVEFYDLNKDPAQLNNMVETADHKELLAQQKRLETLTFCSG 480
>SB_53429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 48
Score = 35.9 bits (79), Expect = 0.039
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +1
Query: 112 CKCQDAKNNTYACIRHIAERIDKKYCLFADNENFSEMYNIADDPYE 249
C C + NNTY C+R I + YC F F E +++ DPY+
Sbjct: 5 CFCPSSNNNTYWCLRTINATHNFLYCEFI--TQFLEYFDLTLDPYQ 48
>SB_31645| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 718
Score = 31.9 bits (69), Expect = 0.64
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 1/107 (0%)
Frame = +1
Query: 13 IEYYGEGKDGSVDKECPWKYDS-GNLAQCYPQYSCKCQDAKNNTYACIRHIAERIDKKYC 189
++YY E G V +YD+ G+ +C P+Y+ C D N+T C+ R Y
Sbjct: 49 LQYYSECWSGVVTNAL--RYDTYGSSDKCLPEYTKNCDD--NSTEICM----GRASTNY- 99
Query: 190 LFADNENFSEMYNIADDPYELENIVNHVFPAVKYWYREILTRMLTCS 330
+Y A P E++VN + AV ++ R+LT +
Sbjct: 100 ----------IYRFAPAPCSAEDVVNAIMNAVPAGSAKVNNRVLTAA 136
>SB_18644| Best HMM Match : RVT_1 (HMM E-Value=0.033)
Length = 757
Score = 31.5 bits (68), Expect = 0.84
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = +1
Query: 121 QDAKNNTYACIRHIAERIDKKYCLFADNENFSEMYNIADDPYELENIVNHVF 276
++ K Y C+ +I + +KK +F DN+ + + +I EL+ I ++F
Sbjct: 426 RELKAVDYVCLSYIEQLRNKKAKVFTDNQGAARIISIGSPSPELQQIALNIF 477
>SB_47472| Best HMM Match : zf-CXXC (HMM E-Value=5.9)
Length = 433
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -2
Query: 226 CTFH*SSHCQRRGNISCRFAPRCV*Y 149
CT H HC RR N+ + APRC Y
Sbjct: 252 CTVH--VHCVRRANVDLKTAPRCTVY 275
>SB_25088| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 795
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = +1
Query: 142 YACIRHIAERIDKKYCLFADNENFSEMYNIADDPYELENIVNHVF 276
Y C+ +I + +K+ +F DN+ + + +I EL+ I ++F
Sbjct: 201 YVCLSYIEQLRNKEAKVFTDNQGAARIISIGSPSPELQQIALNIF 245
>SB_32603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 156
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +1
Query: 70 YDSGNLAQCYPQYSCKCQDAKNNTYACIRHIAERIDKKYCLFADNEN 210
YD N+ + Q+SC D N AC+R K L +DNEN
Sbjct: 69 YDHANVDKASIQHSCLVDDHANVDKACLR---SESSVKIVLSSDNEN 112
>SB_57863| Best HMM Match : Ribosomal_S21 (HMM E-Value=2.8)
Length = 108
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -1
Query: 773 SSVSQFYSAMSVLNNQS--ALLLHSINSNGSCFKCVFLN 663
S++ ++YS + L QS +H +NG CF+ +F+N
Sbjct: 46 SALRKYYSTIRWLQRQSFEVASMHKNPTNGDCFEMLFIN 84
>SB_51779| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3610
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +2
Query: 80 VISLNAILSTVASVKTPKTIHTPVSDTSRSESTRNIASSLTMR 208
V+ + I S K PKT+ T R+ ST+ + +S TMR
Sbjct: 2484 VVKASVIESVPRQDKAPKTVETTTRVVVRNVSTQAVLASTTMR 2526
>SB_25298| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 824
Score = 29.1 bits (62), Expect = 4.5
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -2
Query: 751 VQCLSLIIRAHYCFTVSIVMVHVSSVYF*ISKLIFEFNSV--NFVFVTGF*RCLSCHIL* 578
+ C + I F VS VM H+ SV +S ++F NSV + V C+ H+
Sbjct: 754 ITCSASCITCTATFHVSSVMCHLYSVIIHVSSVMFHVNSVIIHVSSVMFHVNCVMLHVNS 813
Query: 577 CIFDI 563
IF +
Sbjct: 814 VIFHV 818
>SB_30727| Best HMM Match : DUF658 (HMM E-Value=0.39)
Length = 381
Score = 28.7 bits (61), Expect = 5.9
Identities = 17/54 (31%), Positives = 21/54 (38%)
Frame = +1
Query: 85 LAQCYPQYSCKCQDAKNNTYACIRHIAERIDKKYCLFADNENFSEMYNIADDPY 246
LA QY C C D K+ T C I + D L A+ Y +A Y
Sbjct: 20 LATLQRQYRCLCNDKKSYTEECEIVIWRQEDTIQALQAERTELLTFYKVAGRKY 73
>SB_19665| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 491
Score = 28.7 bits (61), Expect = 5.9
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +1
Query: 19 YYGEGKDGSVDKECPWKYD--SGNLAQCYPQYSCKCQDAKNNTYACIRH 159
Y G+GK EC D +G Y+CKC+D K+NT + H
Sbjct: 237 YTGDGKTCDDVNECTTNPDICNGECTNYNGSYTCKCRD-KSNTMSQAPH 284
>SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 167
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/51 (21%), Positives = 23/51 (45%)
Frame = -1
Query: 587 YTVMYF*YCYILG*FYELFYLFCNKICHFYWFSFLWSLHNGIFIINKFYYY 435
Y Y+ Y Y +Y +Y + H+Y++ + + + + +YYY
Sbjct: 105 YYYYYYYYYYYYYYYYYYYYYYYYYYHHYYYYYYYYYYYYYYYYYYYYYYY 155
>SB_24816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 662
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +1
Query: 151 IRHIAERIDKKYCLFADNENFSEMYNIADDPYELENIVNHVFPAVKYWYREI 306
I + + I K LFAD+ +DD +L+N +N ++ W E+
Sbjct: 384 INDMGDEISSKLRLFADDSLLYLTIETSDDVIQLQNDLNKLYEWSNKWQMEL 435
>SB_17495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 572
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +1
Query: 142 YACIRHIAERIDKKYCLFADNENFSEMYNIADDPYELENIVNHVF 276
Y C+ + + +KK +F DN+ + + +I EL+ I ++F
Sbjct: 439 YVCLSYNEQLRNKKAKVFTDNQGAARIISIGSPSPELQQIALNIF 483
>SB_30264| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 689
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +1
Query: 151 IRHIAERIDKKYCLFADNENFSEMYNIADDPYELENIVNHVFPAVKYWYREI 306
I + + I K LFAD+ +DD +L+N +N ++ W E+
Sbjct: 452 INDMGDEISSKLRLFADDSLLYLTIETSDDVIQLQNDLNKLYEWSNKWQMEL 503
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,778,116
Number of Sequences: 59808
Number of extensions: 468170
Number of successful extensions: 1255
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1233
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2263654701
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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