Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0966
         (812 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    29   0.068
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    29   0.068
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.5  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.5  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   3.4  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 28.7 bits (61), Expect = 0.068
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = -3

Query: 249 FVRIVCYVVHFTEVLIVSEEAIFLVDSLRDVSDTGVCIVF 130
           F+ IVC+V +   +  ++E  +++   L   + +G C++F
Sbjct: 418 FIAIVCFVSYLIGLFCITEGGMYVFQLLDSYAVSGFCLLF 457


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 28.7 bits (61), Expect = 0.068
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = -3

Query: 249 FVRIVCYVVHFTEVLIVSEEAIFLVDSLRDVSDTGVCIVF 130
           F+ IVC+V +   +  ++E  +++   L   + +G C++F
Sbjct: 471 FIAIVCFVSYLIGLFCITEGGMYVFQLLDSYAVSGFCLLF 510


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = -3

Query: 168 LRDVSDTGVCIVFGVLTLATVLRIALSEITAIILPRTFFIHRSV 37
           L+  SD   C++FGVL +        +++       T+ I+ S+
Sbjct: 7   LQAESDVSSCVIFGVLFVLFSFLRTRTKLQPTYFHHTYIIYESL 50


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = -3

Query: 168 LRDVSDTGVCIVFGVLTLATVLRIALSEITAIILPRTFFIHRSV 37
           L+  SD   C++FGVL +        +++       T+ I+ S+
Sbjct: 7   LQAESDVSSCVIFGVLFVLFSFLRTRTKLQPTYFHHTYIIYESL 50


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = +1

Query: 64  WKYDSGNLAQCYPQYSCKCQDAKNNTYACIRHIAERIDKKYCLFADNE 207
           WK D G L +     S      KN T  C   ++ R D +  +  ++E
Sbjct: 218 WKNDEGTLRKSPSLTSLNAYLIKNQTITCPIKVSWRADGQIMVDYEDE 265


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,940
Number of Sequences: 438
Number of extensions: 4479
Number of successful extensions: 19
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)