Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0966
         (812 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g35320.1 68415.m04331 expressed protein                             31   0.91 
At4g23860.2 68417.m03431 PHD finger protein-related similar to P...    30   1.6  
At4g23860.1 68417.m03430 PHD finger protein-related similar to P...    30   1.6  
At5g01100.1 68418.m00014 expressed protein similar to axi 1 [Nic...    29   3.7  
At1g11380.1 68414.m01307 expressed protein contains Pfam profile...    29   3.7  
At2g18480.1 68415.m02153 mannitol transporter, putative similar ...    29   4.9  

>At2g35320.1 68415.m04331 expressed protein
          Length = 307

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
 Frame = +1

Query: 154 RHIAERIDKKYCLFADNENFS---EMYNIADD 240
           R +AER +K  C F D+E+ S   E+YN+ D+
Sbjct: 125 RAVAERYEKGLCPFIDSESMSGLDELYNVTDE 156


>At4g23860.2 68417.m03431 PHD finger protein-related similar to Pfam
           profiles PF02207: Putative zinc finger in N-recognin,
           weak hit to PF00628: PHD-finger
          Length = 452

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
 Frame = +1

Query: 28  EGKDGSVDKECPWKYDSGNLAQCYPQ--YSCKCQDAKNNTYACIRHIAERIDKKYCLFAD 201
           EG  G     C   +D   L + + +  + C C ++K  T AC    ++ I+     +  
Sbjct: 63  EGNAGICTACCLSCHDGHELLELWTKRNFRCDCGNSKFGTLACKLLPSKDIENSENSY-- 120

Query: 202 NENFSEMYNIADDPYELENIVNHV 273
           N NF  +Y   D PY   N+   V
Sbjct: 121 NHNFKGLYCTCDRPYPDPNVEEQV 144


>At4g23860.1 68417.m03430 PHD finger protein-related similar to Pfam
           profiles PF02207: Putative zinc finger in N-recognin,
           weak hit to PF00628: PHD-finger
          Length = 452

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
 Frame = +1

Query: 28  EGKDGSVDKECPWKYDSGNLAQCYPQ--YSCKCQDAKNNTYACIRHIAERIDKKYCLFAD 201
           EG  G     C   +D   L + + +  + C C ++K  T AC    ++ I+     +  
Sbjct: 63  EGNAGICTACCLSCHDGHELLELWTKRNFRCDCGNSKFGTLACKLLPSKDIENSENSY-- 120

Query: 202 NENFSEMYNIADDPYELENIVNHV 273
           N NF  +Y   D PY   N+   V
Sbjct: 121 NHNFKGLYCTCDRPYPDPNVEEQV 144


>At5g01100.1 68418.m00014 expressed protein similar to axi 1
           [Nicotiana tabacum] GI:559921; contains Pfam profile
           PF03138: Plant protein family
          Length = 631

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +3

Query: 411 TTIPELMWVVVKFVNYEDAIV*RPQKRKPVKMTN 512
           T+IPE+ W   +  NY+  +  RP+ ++P+K TN
Sbjct: 186 TSIPEI-WNQPEVGNYQKCVA-RPKNQRPIKQTN 217


>At1g11380.1 68414.m01307 expressed protein contains Pfam profile
           PF04749: Protein of unknown function, DUF614
          Length = 254

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 574 IFDIVIF*VNFMNCFIYFVIKFVIFTG 494
           +F++V F V   +CF+Y  I FV+  G
Sbjct: 138 LFNVVAFAVTKRHCFLYLAIAFVLLIG 164


>At2g18480.1 68415.m02153 mannitol transporter, putative similar to
           mannitol transporter [Apium graveolens var. dulce]
           GI:12004316; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 508

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/61 (26%), Positives = 34/61 (55%)
 Frame = -3

Query: 204 IVSEEAIFLVDSLRDVSDTGVCIVFGVLTLATVLRIALSEITAIILPRTFFIHRSVLAFA 25
           ++S   IF+ D L+ ++DT + ++ G+L L  ++    +  T+ ++ R + I  S + F 
Sbjct: 42  VMSGAQIFIRDDLK-INDTQIEVLAGILNLCALVGSLTAGKTSDVIGRRYTIALSAVIFL 100

Query: 24  V 22
           V
Sbjct: 101 V 101


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,588,912
Number of Sequences: 28952
Number of extensions: 308605
Number of successful extensions: 710
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1853336000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)