Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0965
         (629 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    44   1e-06
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    43   2e-06
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    42   3e-06
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    42   3e-06
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    33   0.002
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           25   0.52 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      24   0.91 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      24   0.91 
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    24   1.2  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    23   1.6  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    23   1.6  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   4.9  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   6.4  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   6.4  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   6.4  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   6.4  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   6.4  

>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 43.6 bits (98), Expect = 1e-06
 Identities = 26/81 (32%), Positives = 36/81 (44%)
 Frame = +3

Query: 267 GDLYNRRYNTGPARRTSSVVSSGLTGNRCQYCRLKKCIAVGMSRDAVRFGRVPKREKARI 446
           G  YN   +    +     V +      C+ CRL+KC+ VGMS+   R+GR     K   
Sbjct: 30  GRTYNNISSISECKNNGECVINKKNRTACKACRLRKCLLVGMSKSGSRYGRRSNWFKIHC 89

Query: 447 LAAMQQSSSSRAHEQAAAAEL 509
           L   QQ + +     AAAA L
Sbjct: 90  LLQEQQQAGA---NMAAAANL 107


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 42.7 bits (96), Expect = 2e-06
 Identities = 20/46 (43%), Positives = 32/46 (69%)
 Frame = +3

Query: 345 NRCQYCRLKKCIAVGMSRDAVRFGRVPKREKARILAAMQQSSSSRA 482
           NRCQYCR +KC+ +GM R+AV+  R  +R K R  + ++ +S+ +A
Sbjct: 136 NRCQYCRYQKCLNMGMKREAVQEER--QRTKDRDTSEVESTSNLQA 179


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 42.3 bits (95), Expect = 3e-06
 Identities = 22/55 (40%), Positives = 31/55 (56%)
 Frame = +3

Query: 279 NRRYNTGPARRTSSVVSSGLTGNRCQYCRLKKCIAVGMSRDAVRFGRVPKREKAR 443
           NR+Y    A+   S +      N+C+ CRLKKC  VGM++DAV+  R P+    R
Sbjct: 69  NRQY-VCKAKDEGSCIIDKTHRNQCRACRLKKCQNVGMNKDAVQHERGPRNSTLR 122



 Score = 24.6 bits (51), Expect = 0.69
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +2

Query: 242 SCDP-QGFFRRSIQQKIQYRPCTKNQQCSILRINRESVPVLPTEKMHRRRNEQRCCAIRS 418
           +CD   GFF+RSI++  QY    K++   I+            +K H  RN+ R C ++ 
Sbjct: 54  ACDGCAGFFKRSIRRNRQYVCKAKDEGSCII------------DKTH--RNQCRACRLKK 99

Query: 419 C 421
           C
Sbjct: 100 C 100


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 42.3 bits (95), Expect = 3e-06
 Identities = 22/55 (40%), Positives = 31/55 (56%)
 Frame = +3

Query: 279 NRRYNTGPARRTSSVVSSGLTGNRCQYCRLKKCIAVGMSRDAVRFGRVPKREKAR 443
           NR+Y    A+   S +      N+C+ CRLKKC  VGM++DAV+  R P+    R
Sbjct: 69  NRQY-VCKAKDEGSCIIDKTHRNQCRACRLKKCQNVGMNKDAVQHERGPRNSTLR 122



 Score = 24.6 bits (51), Expect = 0.69
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +2

Query: 242 SCDP-QGFFRRSIQQKIQYRPCTKNQQCSILRINRESVPVLPTEKMHRRRNEQRCCAIRS 418
           +CD   GFF+RSI++  QY    K++   I+            +K H  RN+ R C ++ 
Sbjct: 54  ACDGCAGFFKRSIRRNRQYVCKAKDEGSCII------------DKTH--RNQCRACRLKK 99

Query: 419 C 421
           C
Sbjct: 100 C 100


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 33.1 bits (72), Expect = 0.002
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +3

Query: 348 RCQYCRLKKCIAVGMSRDAV 407
           +CQ CRLKKC++VGM  + V
Sbjct: 239 KCQECRLKKCLSVGMRPECV 258



 Score = 24.2 bits (50), Expect = 0.91
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 254 QGFFRRSIQQKIQYRPCTKNQQCSI 328
           +GFFRRSI +   Y+ C     C I
Sbjct: 209 KGFFRRSITKNAVYQ-CKYGNNCEI 232


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 25.0 bits (52), Expect = 0.52
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 588 SDAITRETRTCRDERAPLAPATE 520
           S +IT+ T+T    + PLAPA E
Sbjct: 33  SGSITQPTKTVIQSKRPLAPAPE 55


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 24.2 bits (50), Expect = 0.91
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +3

Query: 84  DECSEWCEPCR 116
           D+ ++WC+PCR
Sbjct: 581 DQQNQWCKPCR 591


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 24.2 bits (50), Expect = 0.91
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +3

Query: 84  DECSEWCEPCR 116
           D+ ++WC+PCR
Sbjct: 473 DQQNQWCKPCR 483


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/41 (26%), Positives = 17/41 (41%)
 Frame = -3

Query: 399 LCSFRRRCIFSVGNTGTDSLLILRILHCWFFVQGRYCIFCC 277
           LC +   C F +       LL +    C F +   + +FCC
Sbjct: 144 LCIYYFYCAFIIFTVHLLFLLCIYHFFCAFIIFTMHLLFCC 184


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 6/22 (27%), Positives = 12/22 (54%)
 Frame = +2

Query: 389 NEQRCCAIRSCTQTRESAYPRS 454
           N  +CC +R+C+  +   +  S
Sbjct: 186 NGNKCCCLRTCSSAKRPKFENS 207


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 24  IVRGTALKDVISSEESGGVSDECSEWCEPCRVALSCASGTR 146
           +V   A+KDV  S  SGG ++  +    P R A +C   +R
Sbjct: 110 VVAAAAVKDVWQSATSGGGANLTNSLTGPVRPA-ACTPDSR 149


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 261 SSGDLYNRRYNTGPARRTSSVVSSG 335
           S+GD Y+R    G ARR   V   G
Sbjct: 718 SAGDKYSRLVGDGSARRRFVVAVVG 742



 Score = 21.0 bits (42), Expect = 8.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 261  SSGDLYNRRYNTGPARR 311
            S+GD Y+R  N   ARR
Sbjct: 1906 SAGDKYSRLVNNPSARR 1922


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +3

Query: 342 GNRCQYCRL 368
           GN CQYC +
Sbjct: 470 GNSCQYCNI 478


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 339 TGNRCQYCRLKKCIAVGMSRDAVRFGRVPKREK 437
           TG+R  Y  ++K    G S      G  PKR++
Sbjct: 205 TGDRQIYPWMRKVHVAGASNGTFAPGMEPKRQR 237


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 339 TGNRCQYCRLKKCIAVGMSRDAVRFGRVPKREK 437
           TG+R  Y  ++K    G S      G  PKR++
Sbjct: 205 TGDRQIYPWMRKVHVAGASNGTFAPGMEPKRQR 237


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -3

Query: 426 WVHDRIAQHLCSFRRRCIFSVGNTGTDSLLILRILHCW 313
           W+ D I   L   R +   ++ N  TD++ I   +H W
Sbjct: 511 WILDNIYDQLIMPRIQAEVNIWNPLTDTIPIHVWIHPW 548


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 339 TGNRCQYCRLKKCIAVGMSRDAVRFGRVPKREK 437
           TG+R  Y  ++K    G S      G  PKR++
Sbjct: 205 TGDRQIYPWMRKVHVAGASNGTFAPGMEPKRQR 237


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,062
Number of Sequences: 336
Number of extensions: 2257
Number of successful extensions: 22
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16188355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)