Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0965
         (629 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    27   1.7  
SPAC26H5.08c |bgl2||glucan 1,3-beta-glucosidase Bgl2|Schizosacch...    27   3.0  
SPBC1289.09 |tim21||mitochondrial inner membrane presequence tra...    26   5.2  
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase...    25   9.0  
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    25   9.0  
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...    25   9.0  

>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 585

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 385 TAMHFFSRQYWHRFPVNPEDTTLLVLRAGPVL 290
           ++    S+ YW   P+NP D  L +L  GP+L
Sbjct: 326 SSKELLSKDYWRPNPLNPRD-ALSILVNGPLL 356


>SPAC26H5.08c |bgl2||glucan 1,3-beta-glucosidase
           Bgl2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 321

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 421 YPNARKRVSSQRCNSRRRLVHTSKQLPLNLMTLLGCW 531
           Y N  +  ++  CN+   L+    Q P N   +LG W
Sbjct: 71  YTNMIRTYATSDCNTLEYLLPALAQSPYNFSAILGVW 107


>SPBC1289.09 |tim21||mitochondrial inner membrane presequence
           translocase complex subunit Tim21 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 223

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = -3

Query: 552 DERAPLAPATEERHQVQRQLLARVHETTTTVASLRGYALSRVWVHDRIAQHL 397
           DE   L  A EE   V    +  + E T  +    G   SRVW H  + +HL
Sbjct: 103 DEAFELLKANEECRYVFGDHMKALGEATHPLRRTHGILTSRVWDHHGV-EHL 153


>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
           Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 543 APLAPATEERHQVQRQLLARVHETTTTVASLRG 445
           APLA    +   ++  L+  VH TT T  ++ G
Sbjct: 158 APLAKVINDTFGIEEGLMTTVHATTATQKTVDG 190


>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -3

Query: 576 TRETRTCRDERAPLAPATEERHQVQRQLLARVHETTTTVASL 451
           T E +   D++AP     ++  + + +   +V ETTT    L
Sbjct: 224 TEEVKNEEDDKAPKIEEVDDESEKKEKKTKKVKETTTETEEL 265


>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 543 APLAPATEERHQVQRQLLARVHETTTTVASLRG 445
           APLA    +   ++  L+  VH TT T  ++ G
Sbjct: 158 APLAKVINDTFGIEEGLMTTVHATTATQKTVDG 190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,144,750
Number of Sequences: 5004
Number of extensions: 35342
Number of successful extensions: 95
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)