BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0965 (629 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 11_04_0319 - 16348349-16348591,16348818-16349066,16349827-16349832 29 2.3 02_03_0204 - 16369800-16371758,16372260-16372331 29 3.0 01_05_0337 + 21115388-21115961,21116471-21116597,21116683-211168... 29 3.0 02_03_0296 + 17393706-17394052,17394278-17394388,17395507-17395687 29 4.0 09_01_0063 - 956985-957059,957585-957699,959040-959221 28 5.3 12_02_0915 - 24252495-24253079,24253560-24254759,24255234-242553... 28 7.0 07_01_1207 + 11511754-11513865 28 7.0 02_05_1052 + 33770355-33773981,33774217-33774336,33774880-337749... 27 9.3 >11_04_0319 - 16348349-16348591,16348818-16349066,16349827-16349832 Length = 165 Score = 29.5 bits (63), Expect = 2.3 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 1/69 (1%) Frame = -3 Query: 624 RWAQSRSSGSHGSDAITRETRTCRDERAPLAPATEERHQVQRQLLARVHETTTTVASLRG 445 +W + + G G+ T RDER AP+T Q+QR R ++ + Sbjct: 98 QWNEGNAGGG-GAQQYTLMFDQIRDERRGSAPSTPTVEQLQRATPTRYNQHNQHANMRKV 156 Query: 444 YALSR-VWV 421 Y LS +WV Sbjct: 157 YLLSMCIWV 165 >02_03_0204 - 16369800-16371758,16372260-16372331 Length = 676 Score = 29.1 bits (62), Expect = 3.0 Identities = 11/28 (39%), Positives = 20/28 (71%) Frame = -1 Query: 440 RFLAFGYTTESHSISAHSDGDAFFQSAI 357 R++A GY +++HS+SA G+++F I Sbjct: 132 RWVAEGYISKTHSLSAEEVGESYFAELI 159 >01_05_0337 + 21115388-21115961,21116471-21116597,21116683-21116884, 21117460-21117546,21117622-21117681,21117800-21117886, 21118451-21118522,21118675-21118730,21118812-21118897, 21119427-21119517,21119593-21119750,21119827-21119918, 21120110-21120190,21120282-21120479 Length = 656 Score = 29.1 bits (62), Expect = 3.0 Identities = 12/33 (36%), Positives = 17/33 (51%) Frame = +3 Query: 39 ALKDVISSEESGGVSDECSEWCEPCRVALSCAS 137 +LK+ + S + D+ W E C VA CAS Sbjct: 479 SLKEYLKSYPNAKYIDDAKPWSEKCDVAFPCAS 511 >02_03_0296 + 17393706-17394052,17394278-17394388,17395507-17395687 Length = 212 Score = 28.7 bits (61), Expect = 4.0 Identities = 13/38 (34%), Positives = 24/38 (63%) Frame = +1 Query: 397 EMLCDSVVYPNARKRVSSQRCNSRRRLVHTSKQLPLNL 510 E L ++V+ ++ +R+ ++RRRL HTS+ +P L Sbjct: 140 EPLLEAVLDVSSTRRLQRFNAHARRRLKHTSRCMPARL 177 >09_01_0063 - 956985-957059,957585-957699,959040-959221 Length = 123 Score = 28.3 bits (60), Expect = 5.3 Identities = 18/57 (31%), Positives = 27/57 (47%) Frame = +3 Query: 378 IAVGMSRDAVRFGRVPKREKARILAAMQQSSSSRAHEQAAAAELDDAPRLLARVVRA 548 +A +SR A R R P + R L A+ SSS E AE+D L+ ++ + Sbjct: 3 LAAVLSRAAARLLRPPLPLRTRHLCALPSSSSPAPSEAEILAEIDPIVDLVKDILHS 59 >12_02_0915 - 24252495-24253079,24253560-24254759,24255234-24255303, 24257127-24257188 Length = 638 Score = 27.9 bits (59), Expect = 7.0 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 3/69 (4%) Frame = +3 Query: 333 GLT-GNRCQYCRLKKC--IAVGMSRDAVRFGRVPKREKARILAAMQQSSSSRAHEQAAAA 503 GLT G + + C L C ++ S AV+ R+P R ++L Q ++S A AAAA Sbjct: 448 GLTKGEKKRLCGLMDCKKLSPEASMHAVQNERLPLRVVVQVLFFEQVRAASSA-SAAAAA 506 Query: 504 ELDDAPRLL 530 ++ A R L Sbjct: 507 DMPPAARSL 515 >07_01_1207 + 11511754-11513865 Length = 703 Score = 27.9 bits (59), Expect = 7.0 Identities = 11/32 (34%), Positives = 18/32 (56%) Frame = -1 Query: 446 DTRFLAFGYTTESHSISAHSDGDAFFQSAILA 351 + R L G H+ A DG+ FFQ+A+++ Sbjct: 185 EARELVLGRAVHMHAAGAGMDGNLFFQNALMS 216 >02_05_1052 + 33770355-33773981,33774217-33774336,33774880-33774996, 33775322-33775411,33775971-33776078,33776304-33776351 Length = 1369 Score = 27.5 bits (58), Expect = 9.3 Identities = 32/109 (29%), Positives = 46/109 (42%), Gaps = 10/109 (9%) Frame = +3 Query: 237 NVAVTRRASSGDLYNRRYNTGP-ARRTSSVVS--SGLTGNRCQYCRLKKC----IAVGMS 395 + AV R+A++G R + P A R+S+ + +G R Q + ++ G S Sbjct: 35 DAAVRRKAAAGSPATPRRHPSPNAGRSSAAAAEAAGSQARRSQSTERRPATPSRLSPGGS 94 Query: 396 RDAVRFGRVP---KREKARILAAMQQSSSSRAHEQAAAAELDDAPRLLA 533 R A R+ A + SSSS A AAE APR LA Sbjct: 95 RAAAPSSRISAPTSPSSAPSSPSSSSSSSSTPVRDAVAAESQSAPRRLA 143 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,783,394 Number of Sequences: 37544 Number of extensions: 289889 Number of successful extensions: 1187 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 1157 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1186 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1537558360 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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