Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0965
         (629 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0319 - 16348349-16348591,16348818-16349066,16349827-16349832     29   2.3  
02_03_0204 - 16369800-16371758,16372260-16372331                       29   3.0  
01_05_0337 + 21115388-21115961,21116471-21116597,21116683-211168...    29   3.0  
02_03_0296 + 17393706-17394052,17394278-17394388,17395507-17395687     29   4.0  
09_01_0063 - 956985-957059,957585-957699,959040-959221                 28   5.3  
12_02_0915 - 24252495-24253079,24253560-24254759,24255234-242553...    28   7.0  
07_01_1207 + 11511754-11513865                                         28   7.0  
02_05_1052 + 33770355-33773981,33774217-33774336,33774880-337749...    27   9.3  

>11_04_0319 - 16348349-16348591,16348818-16349066,16349827-16349832
          Length = 165

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = -3

Query: 624 RWAQSRSSGSHGSDAITRETRTCRDERAPLAPATEERHQVQRQLLARVHETTTTVASLRG 445
           +W +  + G  G+   T      RDER   AP+T    Q+QR    R ++        + 
Sbjct: 98  QWNEGNAGGG-GAQQYTLMFDQIRDERRGSAPSTPTVEQLQRATPTRYNQHNQHANMRKV 156

Query: 444 YALSR-VWV 421
           Y LS  +WV
Sbjct: 157 YLLSMCIWV 165


>02_03_0204 - 16369800-16371758,16372260-16372331
          Length = 676

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = -1

Query: 440 RFLAFGYTTESHSISAHSDGDAFFQSAI 357
           R++A GY +++HS+SA   G+++F   I
Sbjct: 132 RWVAEGYISKTHSLSAEEVGESYFAELI 159


>01_05_0337 +
           21115388-21115961,21116471-21116597,21116683-21116884,
           21117460-21117546,21117622-21117681,21117800-21117886,
           21118451-21118522,21118675-21118730,21118812-21118897,
           21119427-21119517,21119593-21119750,21119827-21119918,
           21120110-21120190,21120282-21120479
          Length = 656

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 39  ALKDVISSEESGGVSDECSEWCEPCRVALSCAS 137
           +LK+ + S  +    D+   W E C VA  CAS
Sbjct: 479 SLKEYLKSYPNAKYIDDAKPWSEKCDVAFPCAS 511


>02_03_0296 + 17393706-17394052,17394278-17394388,17395507-17395687
          Length = 212

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +1

Query: 397 EMLCDSVVYPNARKRVSSQRCNSRRRLVHTSKQLPLNL 510
           E L ++V+  ++ +R+     ++RRRL HTS+ +P  L
Sbjct: 140 EPLLEAVLDVSSTRRLQRFNAHARRRLKHTSRCMPARL 177


>09_01_0063 - 956985-957059,957585-957699,959040-959221
          Length = 123

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +3

Query: 378 IAVGMSRDAVRFGRVPKREKARILAAMQQSSSSRAHEQAAAAELDDAPRLLARVVRA 548
           +A  +SR A R  R P   + R L A+  SSS    E    AE+D    L+  ++ +
Sbjct: 3   LAAVLSRAAARLLRPPLPLRTRHLCALPSSSSPAPSEAEILAEIDPIVDLVKDILHS 59


>12_02_0915 -
           24252495-24253079,24253560-24254759,24255234-24255303,
           24257127-24257188
          Length = 638

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
 Frame = +3

Query: 333 GLT-GNRCQYCRLKKC--IAVGMSRDAVRFGRVPKREKARILAAMQQSSSSRAHEQAAAA 503
           GLT G + + C L  C  ++   S  AV+  R+P R   ++L   Q  ++S A   AAAA
Sbjct: 448 GLTKGEKKRLCGLMDCKKLSPEASMHAVQNERLPLRVVVQVLFFEQVRAASSA-SAAAAA 506

Query: 504 ELDDAPRLL 530
           ++  A R L
Sbjct: 507 DMPPAARSL 515


>07_01_1207 + 11511754-11513865
          Length = 703

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 446 DTRFLAFGYTTESHSISAHSDGDAFFQSAILA 351
           + R L  G     H+  A  DG+ FFQ+A+++
Sbjct: 185 EARELVLGRAVHMHAAGAGMDGNLFFQNALMS 216


>02_05_1052 +
           33770355-33773981,33774217-33774336,33774880-33774996,
           33775322-33775411,33775971-33776078,33776304-33776351
          Length = 1369

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 32/109 (29%), Positives = 46/109 (42%), Gaps = 10/109 (9%)
 Frame = +3

Query: 237 NVAVTRRASSGDLYNRRYNTGP-ARRTSSVVS--SGLTGNRCQYCRLKKC----IAVGMS 395
           + AV R+A++G     R +  P A R+S+  +  +G    R Q    +      ++ G S
Sbjct: 35  DAAVRRKAAAGSPATPRRHPSPNAGRSSAAAAEAAGSQARRSQSTERRPATPSRLSPGGS 94

Query: 396 RDAVRFGRVP---KREKARILAAMQQSSSSRAHEQAAAAELDDAPRLLA 533
           R A    R+        A    +   SSSS     A AAE   APR LA
Sbjct: 95  RAAAPSSRISAPTSPSSAPSSPSSSSSSSSTPVRDAVAAESQSAPRRLA 143


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,783,394
Number of Sequences: 37544
Number of extensions: 289889
Number of successful extensions: 1187
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1186
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)