Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0965
(629 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14472| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 1e-06
SB_33135| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 3e-06
SB_58028| Best HMM Match : zf-C4 (HMM E-Value=0) 49 4e-06
SB_12110| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_56305| Best HMM Match : zf-C4 (HMM E-Value=0) 44 1e-04
SB_58064| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_32228| Best HMM Match : zf-C4 (HMM E-Value=6.2e-23) 42 4e-04
SB_10105| Best HMM Match : zf-C4 (HMM E-Value=3.60001e-40) 40 0.002
SB_18088| Best HMM Match : zf-C4 (HMM E-Value=7.56701e-44) 37 0.016
SB_30131| Best HMM Match : zf-C4 (HMM E-Value=8.39938e-42) 35 0.047
SB_58027| Best HMM Match : zf-C4 (HMM E-Value=0) 34 0.11
SB_51757| Best HMM Match : Hormone_recep (HMM E-Value=6.4e-37) 34 0.11
SB_9970| Best HMM Match : zf-C4 (HMM E-Value=9.4e-38) 33 0.14
SB_4250| Best HMM Match : zf-C4 (HMM E-Value=2.3e-39) 31 0.58
SB_20447| Best HMM Match : zf-C4 (HMM E-Value=2.09999e-41) 31 1.0
SB_7579| Best HMM Match : HEAT (HMM E-Value=0.0096) 31 1.0
SB_19025| Best HMM Match : Keratin_B2 (HMM E-Value=1.3) 30 1.3
SB_1433| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_32910| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_58463| Best HMM Match : DUF1168 (HMM E-Value=0.44) 29 4.1
SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_36879| Best HMM Match : Hormone_recep (HMM E-Value=0) 28 7.2
SB_25334| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0) 27 9.5
>SB_14472| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 50.4 bits (115), Expect = 1e-06
Identities = 21/38 (55%), Positives = 28/38 (73%)
Frame = +3
Query: 345 NRCQYCRLKKCIAVGMSRDAVRFGRVPKREKARILAAM 458
N+CQYCRLKKC+ VGM R+AV+ GR+P + AA+
Sbjct: 293 NQCQYCRLKKCLKVGMRREAVQRGRIPAAQTPTQNAAL 330
>SB_33135| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 49.2 bits (112), Expect = 3e-06
Identities = 25/57 (43%), Positives = 33/57 (57%)
Frame = +3
Query: 345 NRCQYCRLKKCIAVGMSRDAVRFGRVPKREKARILAAMQQSSSSRAHEQAAAAELDD 515
N CQ+CR++KC+AVGM R+AV+ R EKAR QQ ++A A L D
Sbjct: 74 NSCQFCRMRKCLAVGMKREAVQQARAQDFEKARRRQKRQQ-HKGEIRKEADFATLSD 129
>SB_58028| Best HMM Match : zf-C4 (HMM E-Value=0)
Length = 438
Score = 48.8 bits (111), Expect = 4e-06
Identities = 18/27 (66%), Positives = 24/27 (88%)
Frame = +3
Query: 345 NRCQYCRLKKCIAVGMSRDAVRFGRVP 425
N+CQYCRLKKC+ VGM ++AV+ GR+P
Sbjct: 129 NQCQYCRLKKCLKVGMRKEAVQKGRIP 155
>SB_12110| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 360
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/44 (40%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Frame = +3
Query: 348 RCQYCRLKKCIAVGMSRDAVRFGRVP-KREKARILAAMQQSSSS 476
RCQYCR +KC+A+GM ++AVR R P R + + L +++++ +
Sbjct: 65 RCQYCRFQKCLALGMLKEAVREDRAPGGRPRIKSLIGLKENAET 108
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/35 (37%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Frame = +2
Query: 242 SCDP-QGFFRRSIQQKIQYRPCTKNQQCSILRINR 343
SC+ + FF+R++Q+++QY C +++ C I + NR
Sbjct: 30 SCEGCKSFFKRTVQKQLQY-ACVESKSCQIDKNNR 63
>SB_56305| Best HMM Match : zf-C4 (HMM E-Value=0)
Length = 553
Score = 43.6 bits (98), Expect = 1e-04
Identities = 17/27 (62%), Positives = 20/27 (74%)
Frame = +3
Query: 345 NRCQYCRLKKCIAVGMSRDAVRFGRVP 425
NRCQYCR +KCI GM ++AVR R P
Sbjct: 249 NRCQYCRFQKCIQAGMIKEAVREDRTP 275
>SB_58064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1027
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/44 (45%), Positives = 25/44 (56%)
Frame = +3
Query: 345 NRCQYCRLKKCIAVGMSRDAVRFGRVPKREKARILAAMQQSSSS 476
NRCQ CR+ KC+AVGM + AV++ R P R SS S
Sbjct: 787 NRCQKCRMDKCLAVGMQKSAVQYERRPLSCSTRTSTLSSSSSHS 830
>SB_32228| Best HMM Match : zf-C4 (HMM E-Value=6.2e-23)
Length = 300
Score = 41.9 bits (94), Expect = 4e-04
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = +3
Query: 345 NRCQYCRLKKCIAVGMSRDAVRFGRVPKREKAR 443
N+CQ CRL+KC + M+RDAV+ R P+ + R
Sbjct: 36 NQCQACRLRKCFEMNMNRDAVQHERAPRTSQIR 68
>SB_10105| Best HMM Match : zf-C4 (HMM E-Value=3.60001e-40)
Length = 370
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = +3
Query: 348 RCQYCRLKKCIAVGMSRDAVRFGRVPK 428
+CQ CR KKC VGM R+A+R GR K
Sbjct: 73 QCQACRFKKCATVGMRREAIRRGRPTK 99
>SB_18088| Best HMM Match : zf-C4 (HMM E-Value=7.56701e-44)
Length = 1220
Score = 36.7 bits (81), Expect = 0.016
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 339 TGNRCQYCRLKKCIAVGMSRDAVRF 413
T NRCQYCR +KC+ GM + + F
Sbjct: 871 TRNRCQYCRFEKCVKSGMLKQGMSF 895
Score = 31.1 bits (67), Expect = 0.77
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 254 QGFFRRSIQQKIQYRPCTKNQQCSILRINRESVPVLPTEK 373
+GFF+R++Q++++Y C NQ C I + R EK
Sbjct: 844 KGFFKRTVQKQLEY-TCRGNQDCDINQHTRNRCQYCRFEK 882
>SB_30131| Best HMM Match : zf-C4 (HMM E-Value=8.39938e-42)
Length = 311
Score = 35.1 bits (77), Expect = 0.047
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = +3
Query: 345 NRCQYCRLKKCIAVGMSRDAVRFGRVP 425
N+CQ CR KKC+ V M+R AV+ R P
Sbjct: 85 NQCQACRFKKCLEVKMNRFAVQQERQP 111
>SB_58027| Best HMM Match : zf-C4 (HMM E-Value=0)
Length = 396
Score = 33.9 bits (74), Expect = 0.11
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +3
Query: 345 NRCQYCRLKKCIAVGMSRDAVRFGRVP 425
+RC CR +KC++ GM ++AV+ ++P
Sbjct: 107 SRCPSCRFQKCLSTGMKKEAVQTTKLP 133
>SB_51757| Best HMM Match : Hormone_recep (HMM E-Value=6.4e-37)
Length = 405
Score = 33.9 bits (74), Expect = 0.11
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = +3
Query: 345 NRCQYCRLKKCIAVGMSRDAVRFGRVP 425
N C+ CR+KKC+ VGM D GRVP
Sbjct: 74 NECKACRMKKCVEVGMKFD----GRVP 96
>SB_9970| Best HMM Match : zf-C4 (HMM E-Value=9.4e-38)
Length = 259
Score = 33.5 bits (73), Expect = 0.14
Identities = 31/100 (31%), Positives = 42/100 (42%), Gaps = 9/100 (9%)
Frame = +3
Query: 279 NRRYNTGPARRTSSVVSSGLTGNRCQYCRLKKCIAVGMSRD------AVRF---GRVPKR 431
NR Y + + N+C+ CRLKKC V M++D AV+F G R
Sbjct: 39 NRSYTCRATNGKGNCPVDKIHRNQCRSCRLKKCFDVSMNKDVQFVDLAVQFICAGHRFAR 98
Query: 432 EKARILAAMQQSSSSRAHEQAAAAELDDAPRLLARVVRAH 551
K+R AA+Q R+ L +A L V AH
Sbjct: 99 LKSR--AAVQHERGPRSSTLRKQKMLKEAQERLELVSVAH 136
>SB_4250| Best HMM Match : zf-C4 (HMM E-Value=2.3e-39)
Length = 79
Score = 31.5 bits (68), Expect = 0.58
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +3
Query: 345 NRCQYCRLKKCIAVGMSRD 401
N+C++CRL+KC GM ++
Sbjct: 60 NQCRFCRLRKCFRAGMKKE 78
>SB_20447| Best HMM Match : zf-C4 (HMM E-Value=2.09999e-41)
Length = 419
Score = 30.7 bits (66), Expect = 1.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 345 NRCQYCRLKKCIAVGMSRD 401
NRCQ CR KC+ GM ++
Sbjct: 92 NRCQKCRFVKCLTAGMKKE 110
>SB_7579| Best HMM Match : HEAT (HMM E-Value=0.0096)
Length = 1276
Score = 30.7 bits (66), Expect = 1.0
Identities = 22/61 (36%), Positives = 35/61 (57%)
Frame = +3
Query: 360 CRLKKCIAVGMSRDAVRFGRVPKREKARILAAMQQSSSSRAHEQAAAAELDDAPRLLARV 539
C L K + G++ R P RE+A +LAA+ SSS+ ++A++ EL LL+RV
Sbjct: 509 CVLLKALRRGLNFAEEHSARGPSREEA-LLAAISTPSSSKEDKEASSHEL---KVLLSRV 564
Query: 540 V 542
+
Sbjct: 565 I 565
>SB_19025| Best HMM Match : Keratin_B2 (HMM E-Value=1.3)
Length = 227
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 312 TSSVVSSGLTGNRC-QYCRLKKCIAVGMSRDAVRFG 416
TSS S + G++C Q C KC G +RDA+ G
Sbjct: 19 TSSSRCSAINGDKCIQQCNGTKCECTGRNRDAIYTG 54
>SB_1433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1096
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = +2
Query: 230 STKCSCDPQGFFRRSIQQKIQYRPCTKNQQCSILRINRESVPVLPTEKMHRRRN 391
S C P G RR + + Q+R C + + S V+ TE H+ RN
Sbjct: 730 SLSLRCGPDGLSRRGVTRYAQWRVCHPRADVHLKACHFFSNQVVDTECQHKWRN 783
>SB_32910| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 155
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/62 (25%), Positives = 26/62 (41%)
Frame = +3
Query: 300 PARRTSSVVSSGLTGNRCQYCRLKKCIAVGMSRDAVRFGRVPKREKARILAAMQQSSSSR 479
PA++ + V L G+ + KKC + + R +RE+ R+ SS R
Sbjct: 35 PAKKKTKVALESLEGSNTKVVAKKKCTTLAFHMEPSAVARRNERERNRVRLVNDGFSSLR 94
Query: 480 AH 485
H
Sbjct: 95 QH 96
>SB_58463| Best HMM Match : DUF1168 (HMM E-Value=0.44)
Length = 603
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +2
Query: 299 PCTKNQQCSILRINRESVPVLPTEKMHRR 385
P T NQQ RI E+VP+ P HRR
Sbjct: 382 PITNNQQLRT-RIRPEAVPIAPATPTHRR 409
>SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3511
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = -1
Query: 626 VGGHSHEALARMEATRSRVKLARVEMSAHHSRQQPRSVIK 507
+GG ++L R+ + K+ ++E++ H+ RQ+ R +K
Sbjct: 2073 IGGSGRQSLTRLASYIIEYKVFQIEVTKHYRRQEFRDDLK 2112
>SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1040
Score = 28.3 bits (60), Expect = 5.4
Identities = 21/51 (41%), Positives = 29/51 (56%)
Frame = +3
Query: 366 LKKCIAVGMSRDAVRFGRVPKREKARILAAMQQSSSSRAHEQAAAAELDDA 518
LKK +V + + R R K ++RIL A +Q SSS+ A A+LDDA
Sbjct: 506 LKKEFSV--TEENERLLREKKALESRILDAEEQVSSSKGMITALQAKLDDA 554
>SB_36879| Best HMM Match : Hormone_recep (HMM E-Value=0)
Length = 358
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 348 RCQYCRLKKCIAVGMSRDAVR 410
+CQ CRL++C GM + VR
Sbjct: 62 KCQACRLQRCFDAGMVLNGVR 82
>SB_25334| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 111
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -3
Query: 609 RSSGSHGSDAITRETRTCRDERAPLAPATEERHQ 508
RS G+ A TR+ R RD R + P + HQ
Sbjct: 41 RSQTREGTRATTRDPRATRDYRQLIPPKPQPTHQ 74
>SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 4303
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 436 KRVSSQRCNSRRRLVHTSKQLPLNLMTLLGCWREW 540
KR S+RC+ + ++K L L++M G WR +
Sbjct: 728 KRPPSRRCDVCNTYLSSTKALALHMMLCHGTWRPY 762
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,675,201
Number of Sequences: 59808
Number of extensions: 324692
Number of successful extensions: 1306
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1304
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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