Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0965
         (629 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20910.1 68418.m02483 zinc finger (C3HC4-type RING finger) fa...    29   1.9  
At5g17890.1 68418.m02098 LIM domain-containing protein / disease...    28   5.9  

>At5g20910.1 68418.m02483 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 310

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +3

Query: 456 MQQSSSSRAHEQAAAAELDDAPRLLARVVRAHLDTCEFHA*SRRFHASQS 605
           M  SSS    E++   ELDD  + L + +R     C  H   R  ++S S
Sbjct: 1   MDASSSPSPSEESLKLELDDLQKQLNKKLRFEASVCSIHNLLRDHYSSSS 50


>At5g17890.1 68418.m02098 LIM domain-containing protein / disease
           resistance protein-related low similarity to disease
           resistance protein RPP4 [Arabidopsis thaliana]
           GI:20270890; contains Pfam profiles PF00412: LIM domain,
           PF00931: NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1613

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +1

Query: 406 CDSVVYPNARKRVSSQRCNSRRRLVHTSKQLPLNLMTLLGCWREWC 543
           CD ++Y    + +  Q C   +R   TS+   L ++ L GC    C
Sbjct: 632 CDILIYAQNIELIDLQGCTGLQRFPDTSQLQNLRVVNLSGCTEIKC 677


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,738,944
Number of Sequences: 28952
Number of extensions: 200941
Number of successful extensions: 692
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)