Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0964
(638 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 42 8e-05
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 41 2e-04
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 41 2e-04
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 36 0.005
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 33 0.035
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 33 0.046
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 31 0.14
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 31 0.19
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 30 0.25
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 30 0.32
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 29 0.43
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 29 0.43
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 29 0.57
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 29 0.75
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 28 0.99
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 28 1.3
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom... 28 1.3
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 27 1.7
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 27 1.7
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar... 27 2.3
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz... 27 3.0
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 26 4.0
SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi... 25 9.2
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 9.2
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p... 25 9.2
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 9.2
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 41.9 bits (94), Expect = 8e-05
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +2
Query: 488 CAICLGTCKNKSFTDSCLHQFCFNCLVTWSKVKAECPLCSKIL 616
C IC + + FT C H +C+ CL+ W K CP C + L
Sbjct: 85 CPICTEALQ-RPFTTHCGHTYCYECLLNWLKESKSCPTCRQKL 126
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 40.7 bits (91), Expect = 2e-04
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +2
Query: 488 CAICLGTCKNKSFTDSCLHQFCFNCLVTWSKVKAECPLC 604
C++C+ + T+ C H FC++C+ W+ K+ECPLC
Sbjct: 256 CSLCMEFIHCPAATE-CGHIFCWSCINGWTSKKSECPLC 293
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 40.7 bits (91), Expect = 2e-04
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +2
Query: 488 CAICLGTCKNKSFTDSCLHQFCFNCLVTWSKVKAECPLCSKILNQ 622
C IC K + F +C H +C CL W K + CP+C LN+
Sbjct: 1092 CIICRDIIK-QGFITTCGHLYCSFCLEAWLKHSSSCPMCKTKLNK 1135
>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 35.9 bits (79), Expect = 0.005
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +2
Query: 488 CAICLGTCKNKSFTDSCLHQFCFNCLVTWSKVKAE-CPLC 604
CAIC K C H FC +CL+ K K + CPLC
Sbjct: 360 CAICSNVAY-KPVRLGCSHVFCLHCLIILQKQKVDFCPLC 398
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 33.1 bits (72), Expect = 0.035
Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 4/78 (5%)
Frame = +2
Query: 398 DDISEANPSSIKSDDSSPHHDNSRG----SPPPNCAICLGTCKNKSFTDSCLHQFCFNCL 565
D ++ + S+++ + S D SRG S P +C N + C H C C
Sbjct: 52 DSSTDLSDSTLEDVEGSEWADVSRGRYFGSDPSESIVCHNCKGNGHISKDCPHVLCTTCG 111
Query: 566 VTWSKVKAECPLCSKILN 619
+ CP K +N
Sbjct: 112 AIDDHISVRCPWTKKCMN 129
>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 268
Score = 32.7 bits (71), Expect = 0.046
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +2
Query: 485 NCAICLGTCKNKSFTDSCLH-QFCFNCLVTWSKVKAECPLCSK 610
+C ICL ++ C H QF ++C+ W CP+C +
Sbjct: 20 DCVICLQKDGLRAQLSPCGHDQFDYSCICRWMDQSLTCPICKR 62
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 31.1 bits (67), Expect = 0.14
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +2
Query: 536 CLHQFCFNCLVTW-SKVKAECPLCSK 610
C H F C+ TW + +KA CPLC++
Sbjct: 223 CEHVFHTQCIDTWMTTMKASCPLCNE 248
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 30.7 bits (66), Expect = 0.19
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 536 CLHQFCFNCLVTWSKVKAECPLC 604
C H F +CL +W +V CPLC
Sbjct: 56 CGHYFHNHCLESWCRVANTCPLC 78
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 30.3 bits (65), Expect = 0.25
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Frame = +2
Query: 488 CAICLGTCK-NKSFTD-SCLHQFCFNCLVTWSKVKAECPLC 604
C IC+ K N C H F NC+ W +V C +C
Sbjct: 396 CTICMEMFKINDDVIQLPCKHYFHENCIKPWLRVNGTCAIC 436
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 29.9 bits (64), Expect = 0.32
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +2
Query: 536 CLHQFCFNCLVTWSKVKAECPLCSK 610
C H F NCL W + CPLC K
Sbjct: 127 CGHIFGKNCLQKWLENHCTCPLCRK 151
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 29.5 bits (63), Expect = 0.43
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +2
Query: 488 CAICLGTCKNKSFTDSCLHQFCFNCLVTWSKVK-AECPLC 604
C++C + +C H FC NC+ + + K + CP C
Sbjct: 639 CSVCNFSNWKSKLIPNCGHAFCSNCMEPFYEHKTSTCPQC 678
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 29.5 bits (63), Expect = 0.43
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 8/47 (17%)
Frame = +2
Query: 488 CAICLG------TCKNKSFTDSCLHQFCFNCLVTW--SKVKAECPLC 604
CAIC T NK +C H+F +CL W S + CPLC
Sbjct: 1558 CAICYSVLSVERTLPNKR-CGTCRHKFHASCLYKWFKSSNSSRCPLC 1603
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 29.1 bits (62), Expect = 0.57
Identities = 13/39 (33%), Positives = 16/39 (41%)
Frame = +2
Query: 488 CAICLGTCKNKSFTDSCLHQFCFNCLVTWSKVKAECPLC 604
C IC G + C H FC CL+ +CP C
Sbjct: 169 CQICFGMLYDP-VVSPCGHTFCGPCLMQALTQSPQCPTC 206
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 28.7 bits (61), Expect = 0.75
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
Frame = +2
Query: 485 NCAICLGTCKNKSFTDSCLHQFCFNCL----------VTWSKVKAECPLC 604
NC++CL C F C H C C+ + S + A+CP+C
Sbjct: 605 NCSVCLDPCLAPVFIIPCGHFTCQECMSMLVGQKYGSSSTSTIIAKCPMC 654
>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 28.3 bits (60), Expect = 0.99
Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +2
Query: 524 FTDSCLHQFCFNCLVTWSKV--KAECPLC 604
+T C H +C+ C+++ K+ CP+C
Sbjct: 209 YTTDCGHTYCYACIMSRLKLVNNVSCPIC 237
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 27.9 bits (59), Expect = 1.3
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +2
Query: 536 CLHQFCFNCLVTWSKVKAECPLC 604
C H + CL+ W + ++ CP+C
Sbjct: 647 CHHLYHRQCLLQWMETRSICPVC 669
>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 107
Score = 27.9 bits (59), Expect = 1.3
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +2
Query: 533 SCLHQFCFNCLVTWSKVKAECPL 601
+C H F F+C+ W + CPL
Sbjct: 73 TCNHAFHFHCISRWLNTRNVCPL 95
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 27.5 bits (58), Expect = 1.7
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = +2
Query: 488 CAICLGTCKNKSFTDSCLHQFCFNCLVTWSKVKAECPLC 604
C IC + T SC H FC C+ + + CP C
Sbjct: 29 CLICHEYFRAPLIT-SCSHTFCSFCIRDYLREHPMCPAC 66
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 27.5 bits (58), Expect = 1.7
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +2
Query: 536 CLHQFCFNCLVTWSKVKAECPLCSK 610
C H F+CL W + + CP+C +
Sbjct: 328 CGHILHFHCLRNWLERQQTCPICRR 352
>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 205
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Frame = +2
Query: 512 KNKSFTDSCLHQFCFNCLVTWSKVKAECPL--CSKILNQ*FI 631
K F C H FC C K CP+ C K + + FI
Sbjct: 159 KKSIFAAKCGHLFCSTCAKELRKKTVPCPVQHCRKRITKKFI 200
>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 702
Score = 26.6 bits (56), Expect = 3.0
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = -2
Query: 487 VRRWRPSAVVMMWTAIITLYAAWVCFRDIIQRLWYSR 377
+ + P +++W + L A W+ + I RLW R
Sbjct: 247 IAQMSPITYLVLWLFLSFLLALWIYYLTDIPRLWQMR 283
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 26.2 bits (55), Expect = 4.0
Identities = 16/69 (23%), Positives = 26/69 (37%)
Frame = +2
Query: 398 DDISEANPSSIKSDDSSPHHDNSRGSPPPNCAICLGTCKNKSFTDSCLHQFCFNCLVTWS 577
D + E K ++ ++ P C IC ++ T +C H FC C +T
Sbjct: 225 DSVQEKYKKGAKLEEGMVKNEKKEDIPFV-CLICKKDYRSPIAT-TCGHHFCEQCAITRY 282
Query: 578 KVKAECPLC 604
+ C C
Sbjct: 283 RKTPTCIQC 291
>SPAC17G8.10c |dma1||mitotic spindle checkpoint protein
Dma1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 25.0 bits (52), Expect = 9.2
Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Frame = +2
Query: 464 SRGSPPPNCAICLGTCK--NKSFTDSCLHQFCFNCL 565
S S PP C ICL F C H + + C+
Sbjct: 184 SSESGPPECCICLMPVLPCQALFVAPCSHSYHYKCI 219
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.0 bits (52), Expect = 9.2
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -3
Query: 417 FASEISSKDCGIVAMIAYRDISNGFTTSCVSNLQRYLS 304
F S + + D G + D FT+ V NLQ YL+
Sbjct: 587 FQSSLFANDNGRKLVRLANDAVTDFTSQTVQNLQEYLN 624
>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 595
Score = 25.0 bits (52), Expect = 9.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 185 YIIYHVTLQRNLSGTYRHNNVEDLRD 262
Y+ YH T + TYR NN+E+L++
Sbjct: 441 YLSYHETSVSH--NTYRQNNLEELKN 464
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.0 bits (52), Expect = 9.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 401 DISEANPSSIKSDDSSPHHDNSRGSPPPN 487
D+ E + SS+ S +SP D+ +P PN
Sbjct: 13 DLDEESASSLVSSAASPFIDSDLETPRPN 41
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,771,481
Number of Sequences: 5004
Number of extensions: 57999
Number of successful extensions: 187
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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