Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0964
         (638 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   2.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   2.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   2.5  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   4.4  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   7.6  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   7.6  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   7.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.6  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   7.6  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 348 HWKYHDRQSWRLYHNLWMISL 410
           HW  H   S+R Y +L M+ L
Sbjct: 78  HWVIHPCSSFRFYWDLCMLLL 98


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 348 HWKYHDRQSWRLYHNLWMISL 410
           HW  H   S+R Y +L M+ L
Sbjct: 78  HWVIHPCSSFRFYWDLCMLLL 98


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 348 HWKYHDRQSWRLYHNLWMISL 410
           HW  H   S+R Y +L M+ L
Sbjct: 78  HWVIHPCSSFRFYWDLCMLLL 98


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -2

Query: 322 SSTLSIYLP--IVIFPVASPHHVSQIFNVIVTIGT*QI 215
           SST+S YLP  +++F     +  + I    + +GT Q+
Sbjct: 210 SSTISFYLPLFVMVFTYYKIYRAAVIQTKSLKLGTKQV 247


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = -1

Query: 344 SPHHVSQIFNVIYLSTYRDISSGF--TTSCL 258
           +P HV ++  V   STY DI+      T CL
Sbjct: 274 APFHVQRLLYVYEDSTYDDINQWVYPLTGCL 304


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = -1

Query: 302 STYRDISSGFTTSCLSNLQRYCDDRYL 222
           S  R I    T SC  NLQ +  DR L
Sbjct: 125 SITRSIRLTITASCPMNLQYFPMDRQL 151


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = -1

Query: 302 STYRDISSGFTTSCLSNLQRYCDDRYL 222
           S  R I    T SC  NLQ +  DR L
Sbjct: 125 SITRSIRLTITASCPMNLQYFPMDRQL 151


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 419  PSSIKSDDSSPHHDNSRGSPPP 484
            P+SI+ DD   H       PPP
Sbjct: 980  PTSIRVDDLDQHTLKVTWKPPP 1001


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = -1

Query: 302 STYRDISSGFTTSCLSNLQRYCDDRYL 222
           S  R I    T SC  NLQ +  DR L
Sbjct: 64  SITRSIRLTITASCPMNLQYFPMDRQL 90


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,790
Number of Sequences: 438
Number of extensions: 3694
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)