Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0962
         (740 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   2.6  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    23   2.6  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    23   2.6  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    22   4.5  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    21   7.9  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   7.9  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    21   7.9  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    21   7.9  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   7.9  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -3

Query: 324 GSPLCSPRRCPANAFPLYRWIRQRRGYP 241
           G+P+C       NA  L +W   + G+P
Sbjct: 324 GNPICVQIPWDKNAEALAKWANGQTGFP 351


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 323 PSSLSPTPIQL*RCALREH 379
           P + +PT   + RCALR+H
Sbjct: 94  PQTSAPTGPPIVRCALRKH 112


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 543 DDLAQRCAQYKKDGCH 590
           D++A RCA  +++ CH
Sbjct: 161 DEIAIRCAFLERENCH 176


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 311 HRGEPSSLSPTPIQ 352
           H GEP+ L+P  IQ
Sbjct: 217 HTGEPTDLTPEQIQ 230


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = -3

Query: 294 PANAFPLYRWIRQRRGYP 241
           P    P Y+W++ +R  P
Sbjct: 190 PQPVLPTYKWMQVKRNVP 207


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
 Frame = +2

Query: 464 HHPRHQGRQGCRPAVRIGRRMHHPGSGRPRPAL-RPVQEGRLPLRQVALRAEDRPQHPLV 640
           HH  H  +Q      + G  MH  G    +P + +   +G+ P    A  A   P +P +
Sbjct: 178 HHQPHHQQQHMMYGGQQGANMHQQGPPHQQPPIQQQPNQGQQPPGNTA-AALPSPLYPWM 236

Query: 641 PS 646
            S
Sbjct: 237 RS 238


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = -3

Query: 294 PANAFPLYRWIRQRRGYP 241
           P    P Y+W++ +R  P
Sbjct: 190 PQPVLPTYKWMQVKRNVP 207


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = -3

Query: 294 PANAFPLYRWIRQRRGYP 241
           P    P Y+W++ +R  P
Sbjct: 190 PQPVLPTYKWMQVKRNVP 207


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
 Frame = +2

Query: 464 HHPRHQGRQGCRPAVRIGRRMHHPGSGRPRPAL-RPVQEGRLPLRQVALRAEDRPQHPLV 640
           HH  H  +Q      + G  MH  G    +P + +   +G+ P    A  A   P +P +
Sbjct: 180 HHQPHHQQQHMMYGGQQGANMHQQGPPHQQPPIQQQPNQGQQPPGNTA-AALPSPLYPWM 238

Query: 641 PS 646
            S
Sbjct: 239 RS 240


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,489
Number of Sequences: 336
Number of extensions: 4156
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19884055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)