Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0962
(740 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26182| Best HMM Match : Glycolytic (HMM E-Value=0) 243 1e-64
SB_28080| Best HMM Match : Glycolytic (HMM E-Value=0) 243 1e-64
SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26) 38 0.009
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0) 38 0.009
SB_51702| Best HMM Match : SURF6 (HMM E-Value=4) 32 0.56
SB_28668| Best HMM Match : UCH (HMM E-Value=8e-12) 32 0.56
SB_59586| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_32406| Best HMM Match : VWA (HMM E-Value=8.8e-32) 30 2.3
SB_24645| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_10368| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_31082| Best HMM Match : Motilin_ghrelin (HMM E-Value=0.23) 29 4.0
SB_58036| Best HMM Match : Cadherin (HMM E-Value=0) 29 4.0
SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002) 29 4.0
SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33) 29 5.2
SB_907| Best HMM Match : RVT_1 (HMM E-Value=1.3e-27) 29 5.2
SB_24199| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_40766| Best HMM Match : WD40 (HMM E-Value=1.19993e-41) 28 9.1
SB_38784| Best HMM Match : Apo-VLDL-II (HMM E-Value=8.3) 28 9.1
SB_36428| Best HMM Match : MutS_V (HMM E-Value=2.1e-33) 28 9.1
SB_18905| Best HMM Match : Nop (HMM E-Value=0) 28 9.1
>SB_26182| Best HMM Match : Glycolytic (HMM E-Value=0)
Length = 949
Score = 243 bits (594), Expect = 1e-64
Identities = 121/161 (75%), Positives = 134/161 (83%), Gaps = 1/161 (0%)
Frame = +3
Query: 183 TPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQLLFSSDA 362
TPEL+ ELK+IA+AIVA KGILAADESTGTMGKRL +IGVENTEENRR YRQLLF+S
Sbjct: 6 TPELKAELKRIAEAIVADGKGILAADESTGTMGKRLANIGVENTEENRRLYRQLLFTSGK 65
Query: 363 VLSENISGVILFHETLYQKADDGTPLVSLLEKKGIIPGIKVDKGVVPLFGSE-DECTTQG 539
+S ISGVILFHET+YQKADDGTP V LL +GIIPGIKVDKGVV L G++ E TTQG
Sbjct: 66 EMSNAISGVILFHETVYQKADDGTPFVRLLRDQGIIPGIKVDKGVVVLAGTDAGETTTQG 125
Query: 540 LDDLAQRCAQYKKDGCHFAKWRCVLKIGRNTPSYQAIQENA 662
LD L +RCAQYKKDGC FAKWRCVLKI TPS A++ENA
Sbjct: 126 LDGLGERCAQYKKDGCDFAKWRCVLKITDYTPSELAMKENA 166
Score = 41.1 bits (92), Expect = 0.001
Identities = 19/34 (55%), Positives = 22/34 (64%)
Frame = +1
Query: 634 PRTKLSRKTPNVLARYASICQSQRIVPIVEPRSL 735
P ++ NVLARYASICQ +VPIVEP L
Sbjct: 157 PSELAMKENANVLARYASICQQNGLVPIVEPEVL 190
>SB_28080| Best HMM Match : Glycolytic (HMM E-Value=0)
Length = 304
Score = 243 bits (594), Expect = 1e-64
Identities = 121/161 (75%), Positives = 134/161 (83%), Gaps = 1/161 (0%)
Frame = +3
Query: 183 TPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQLLFSSDA 362
TPEL+ ELK+IA+AIVA KGILAADESTGTMGKRL +IGVENTEENRR YRQLLF+S
Sbjct: 6 TPELKAELKRIAEAIVADGKGILAADESTGTMGKRLANIGVENTEENRRLYRQLLFTSGK 65
Query: 363 VLSENISGVILFHETLYQKADDGTPLVSLLEKKGIIPGIKVDKGVVPLFGSE-DECTTQG 539
+S ISGVILFHET+YQKADDGTP V LL +GIIPGIKVDKGVV L G++ E TTQG
Sbjct: 66 EMSNAISGVILFHETVYQKADDGTPFVRLLRDQGIIPGIKVDKGVVVLAGTDAGETTTQG 125
Query: 540 LDDLAQRCAQYKKDGCHFAKWRCVLKIGRNTPSYQAIQENA 662
LD L +RCAQYKKDGC FAKWRCVLKI TPS A++ENA
Sbjct: 126 LDGLGERCAQYKKDGCDFAKWRCVLKITDYTPSELAMKENA 166
Score = 41.1 bits (92), Expect = 0.001
Identities = 19/34 (55%), Positives = 22/34 (64%)
Frame = +1
Query: 634 PRTKLSRKTPNVLARYASICQSQRIVPIVEPRSL 735
P ++ NVLARYASICQ +VPIVEP L
Sbjct: 157 PSELAMKENANVLARYASICQQNGLVPIVEPEVL 190
>SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26)
Length = 687
Score = 37.9 bits (84), Expect = 0.009
Identities = 34/101 (33%), Positives = 37/101 (36%), Gaps = 5/101 (4%)
Frame = +2
Query: 401 RDPLPEG*RWNASGLPAGEEGHHPRHQGR---QGCRPAVRIGRRMHHPGSGRPRPALRPV 571
R P G + G P E G P GR + RP GR H PG P P
Sbjct: 324 RPPYEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPY 383
Query: 572 QEGRLPLRQVALRAEDRPQHPL--VPSYPGKRPMFSPATLP 688
+ GR P RP H L P PG RP P LP
Sbjct: 384 EPGRPP------HEPGRPPHELGRPPHEPG-RPPHEPGRLP 417
Score = 33.1 bits (72), Expect = 0.24
Identities = 23/69 (33%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Frame = +2
Query: 401 RDPLPEG*RWNASGLPAGEEGHHPRHQGR---QGCRPAVRIGRRMHHPGSGRPRPALRPV 571
R P G + G P E G P GR + RP +GR H PG P P
Sbjct: 359 RPPHEPGRPPHEPGRPPHEPGRPPYEPGRPPHEPGRPPHELGRPPHEPGRPPHEPGRLPH 418
Query: 572 QEGRLPLRQ 598
+ GR P Q
Sbjct: 419 EPGRPPYEQ 427
Score = 28.7 bits (61), Expect = 5.2
Identities = 30/99 (30%), Positives = 39/99 (39%), Gaps = 3/99 (3%)
Frame = +2
Query: 401 RDPLPEG*RWNASGLPAGEEGHHPRHQGR---QGCRPAVRIGRRMHHPGSGRPRPALRPV 571
R P G + G P E G P GR + RP GR H PG P RP
Sbjct: 366 RPPHEPGRPPHEPGRPPYEPGRPPHEPGRPPHELGRPPHEPGRPPHEPGR-LPHEPGRPP 424
Query: 572 QEGRLPLRQVALRAEDRPQHPLVPSYPGKRPMFSPATLP 688
E R P + + +A +H + S+ P+F P P
Sbjct: 425 YEQRRPPHEKSWQAF---EHQRI-SHEHGGPLFEPGRPP 459
>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 1282
Score = 37.9 bits (84), Expect = 0.009
Identities = 34/101 (33%), Positives = 37/101 (36%), Gaps = 5/101 (4%)
Frame = +2
Query: 401 RDPLPEG*RWNASGLPAGEEGHHPRHQGR---QGCRPAVRIGRRMHHPGSGRPRPALRPV 571
R P G + G P E G P GR + RP GR H PG P P
Sbjct: 90 RPPYEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPY 149
Query: 572 QEGRLPLRQVALRAEDRPQHPL--VPSYPGKRPMFSPATLP 688
+ GR P RP H L P PG RP P LP
Sbjct: 150 EPGRPP------HEPGRPPHELGRPPHEPG-RPPHEPGRLP 183
Score = 33.1 bits (72), Expect = 0.24
Identities = 23/69 (33%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Frame = +2
Query: 401 RDPLPEG*RWNASGLPAGEEGHHPRHQGR---QGCRPAVRIGRRMHHPGSGRPRPALRPV 571
R P G + G P E G P GR + RP +GR H PG P P
Sbjct: 125 RPPHEPGRPPHEPGRPPHEPGRPPYEPGRPPHEPGRPPHELGRPPHEPGRPPHEPGRLPH 184
Query: 572 QEGRLPLRQ 598
+ GR P Q
Sbjct: 185 EPGRPPYEQ 193
Score = 28.7 bits (61), Expect = 5.2
Identities = 30/99 (30%), Positives = 39/99 (39%), Gaps = 3/99 (3%)
Frame = +2
Query: 401 RDPLPEG*RWNASGLPAGEEGHHPRHQGR---QGCRPAVRIGRRMHHPGSGRPRPALRPV 571
R P G + G P E G P GR + RP GR H PG P RP
Sbjct: 132 RPPHEPGRPPHEPGRPPYEPGRPPHEPGRPPHELGRPPHEPGRPPHEPGR-LPHEPGRPP 190
Query: 572 QEGRLPLRQVALRAEDRPQHPLVPSYPGKRPMFSPATLP 688
E R P + + +A +H + S+ P+F P P
Sbjct: 191 YEQRRPPHEKSWQAF---EHQRI-SHEHGGPLFEPGRPP 225
>SB_51702| Best HMM Match : SURF6 (HMM E-Value=4)
Length = 260
Score = 31.9 bits (69), Expect = 0.56
Identities = 30/131 (22%), Positives = 57/131 (43%), Gaps = 6/131 (4%)
Frame = +3
Query: 207 KKIAQAIVAPA-KGILAADESTGTMGKRLQDIGVENT-EENRRRYRQLLFSSDAVLSENI 380
K +A++ +A K E TGT +QD G NT + ++ + + + S VLS +
Sbjct: 92 KHVARSFIAELEKRKQTGKEGTGTDASEMQDSGAVNTCQSDKHVFTKHVAESKVVLSPSS 151
Query: 381 ---SGVILFHE-TLYQKADDGTPLVSLLEKKGIIPGIKVDKGVVPLFGSEDECTTQGLDD 548
GV++ E + QK D V+ E +G + + G+ L ++E + +
Sbjct: 152 HGKQGVLMMPEYVVGQKPDKQKKKVTRDESQGSVKSQEKTVGITHLQVEQEEVEEEEIST 211
Query: 549 LAQRCAQYKKD 581
+ ++D
Sbjct: 212 TTLTAGENQRD 222
>SB_28668| Best HMM Match : UCH (HMM E-Value=8e-12)
Length = 893
Score = 31.9 bits (69), Expect = 0.56
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Frame = +2
Query: 497 RPAVRIGRRMHHPGSGRPRPALRPVQEGRLPLRQVALRAEDRPQHPLVPSYPGKRPMFSP 676
RP + R H + P +Q+G+ P A++ + +PQ P V P +P P
Sbjct: 562 RPDGAVARPQPHRSAEPSIPTPHTMQQGQPP----AIQIKQQPQPPAVEPPPEPKPKAKP 617
Query: 677 AT----LPSVRANASCRLSSPEV 733
AT + ++N LSSP +
Sbjct: 618 ATPDRLMQPTKSNLRRSLSSPNL 640
>SB_59586| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +3
Query: 378 ISGVILFHETLYQKADDGTPLVSLLEKK 461
+SG ++ +E L+Q DD TPLV +L ++
Sbjct: 103 LSGSVVSNEWLHQLMDDSTPLVQILAER 130
>SB_32406| Best HMM Match : VWA (HMM E-Value=8.8e-32)
Length = 1074
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Frame = +2
Query: 428 WNASGLPAGEEGHHPRHQGRQGCRPAVRIGRRMHHPGSGR---PRPALRPVQEGRLP 589
W G+P G P GR G P G + G+ PRP +RP + GR+P
Sbjct: 515 WRPGGIPGRTPGRRPG--GRPGNIPPFVPGLIIPSRRPGKRPGPRPGIRPGRGGRIP 569
>SB_24645| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 226
Score = 29.9 bits (64), Expect = 2.3
Identities = 27/94 (28%), Positives = 41/94 (43%)
Frame = +3
Query: 168 YFQYPTPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQLL 347
Y Q E ELK+ Q+ + I + +S G GK + E EE RY +
Sbjct: 91 YLQMNDEESLPELKRARQSFITMVTRINNSSQSVGKDGKAKTSLFSE--EEKDTRYLVIA 148
Query: 348 FSSDAVLSENISGVILFHETLYQKADDGTPLVSL 449
FS+D S I+ + +T + + D L+SL
Sbjct: 149 FSNDHFTSAFIAESGITRKT--EDSADWLRLISL 180
>SB_10368| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 413
Score = 29.5 bits (63), Expect = 3.0
Identities = 22/66 (33%), Positives = 32/66 (48%)
Frame = +2
Query: 500 PAVRIGRRMHHPGSGRPRPALRPVQEGRLPLRQVALRAEDRPQHPLVPSYPGKRPMFSPA 679
PA+R M + P PA+RP+ R PL + RP P +P P RP+ +
Sbjct: 208 PAIRPVPAMRPLPAMPPVPAMRPLPAMR-PLPAMRPLPAMRPL-PAMPPLPAMRPLPAMR 265
Query: 680 TLPSVR 697
LP++R
Sbjct: 266 PLPAMR 271
Score = 28.7 bits (61), Expect = 5.2
Identities = 22/66 (33%), Positives = 32/66 (48%)
Frame = +2
Query: 500 PAVRIGRRMHHPGSGRPRPALRPVQEGRLPLRQVALRAEDRPQHPLVPSYPGKRPMFSPA 679
PA+R M + RP A+RP+ R PL + RP P +P P RP+ +
Sbjct: 178 PAMRPLPAMRPLPAMRPLSAMRPLPAMR-PLPAIRPVPAMRPL-PAMPPVPAMRPLPAMR 235
Query: 680 TLPSVR 697
LP++R
Sbjct: 236 PLPAMR 241
Score = 28.7 bits (61), Expect = 5.2
Identities = 22/66 (33%), Positives = 32/66 (48%)
Frame = +2
Query: 500 PAVRIGRRMHHPGSGRPRPALRPVQEGRLPLRQVALRAEDRPQHPLVPSYPGKRPMFSPA 679
PA+R M + P PA+RP+ R PL + RP P +P P RP+ +
Sbjct: 238 PAMRPLPAMRPLPAMPPLPAMRPLPAMR-PLPAMRPLPAMRPL-PAMPPLPAMRPLPAMR 295
Query: 680 TLPSVR 697
LP++R
Sbjct: 296 PLPAMR 301
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = +2
Query: 524 MHHPGSGRPRPALRPVQEGRLPLRQVALRAEDRPQHPLVPSYPGKRPMFSPATLPSVR 697
MH + RP PA+RP+ R PL + RP + P P RP+ + LP++R
Sbjct: 114 MHPLSAMRPLPAMRPLSAMR-PLPAMRPVPAMRPLLAMRP-LPAMRPLPAMRPLPAMR 169
>SB_31082| Best HMM Match : Motilin_ghrelin (HMM E-Value=0.23)
Length = 565
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 548 PRPALRPVQEGRLPLRQVALRAEDRPQHPLVPSYPGKRP 664
P+P + P Q+ P + V+ +++ RP P V S P RP
Sbjct: 508 PKP-VEPNQQQEEPEKPVSPKSQSRPSTPKVGSRPSSRP 545
>SB_58036| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 6074
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -2
Query: 568 WAQRWARSSRPWVVHSSSDPNSGTTPLSTLMPGMMPFFSSR 446
WAQ ++ SS PW S + SGT S+L ++ +S +
Sbjct: 5909 WAQNYSSSSSPWAPSSPASVRSGTYS-SSLATDILDTYSQK 5948
>SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)
Length = 3616
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +3
Query: 189 ELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQLLFSSDAVL 368
E+Q+ L K AQ +V+ +KG+ D + + K + +N E++R R + S D
Sbjct: 1006 EIQQGLNKAAQCVVSVSKGVSQWDRTCRALRKAEKRDDSDN-EDSRSRSASNVGSDDESR 1064
Query: 369 SE 374
SE
Sbjct: 1065 SE 1066
>SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33)
Length = 693
Score = 28.7 bits (61), Expect = 5.2
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Frame = +2
Query: 500 PAVRIGRRMH-HP----GSGRPRPALRPVQEGRLPLRQVALRAEDRPQ-HPLVPSYPGKR 661
PA +I + H +P G P P+ PV P A+ P +P +P+YP +
Sbjct: 16 PAHQIPEKAHGYPREASGGFNPPPSSVPVSYPGPPPAMYAVPGMPMPPAYPGMPTYPPQP 75
Query: 662 PMFSPATLPSV 694
F P TLP +
Sbjct: 76 MQFLPGTLPGM 86
>SB_907| Best HMM Match : RVT_1 (HMM E-Value=1.3e-27)
Length = 681
Score = 28.7 bits (61), Expect = 5.2
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = -2
Query: 172 K*VDIVAEIALDV*SAFV*TQGEFIFNRLKSFDSIPPCINXXXXXLMKNQAIVGID 5
K VD V + D AF E + +LKS+D P IN L + VG+D
Sbjct: 520 KDVDFVRVFSFDFSKAFDSVSHEIVCRKLKSYDISPYVINWIVSFLGNRKQRVGVD 575
>SB_24199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +2
Query: 554 PALRPVQEGRLPLRQVALRA-EDRPQHPLVPSYPGKRPMFS-PATLPS 691
P R +Q G + + L++ E + + PL PGK P+F+ P LPS
Sbjct: 23 PKGRAIQRGGIQKLKTKLQSCEQQKRSPLDSRCPGKPPLFALPKPLPS 70
>SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 791
Score = 27.9 bits (59), Expect = 9.1
Identities = 26/94 (27%), Positives = 33/94 (35%), Gaps = 1/94 (1%)
Frame = +2
Query: 425 RWNASGLPAGEEGHHPRHQGRQGCRPAVR-IGRRMHHPGSGRPRPALRPVQEGRLPLRQV 601
RW P HP Q PA++ + R + S R R E +
Sbjct: 634 RWPRPPSPEPARHSHPDVTSSQS--PALKTVKRPSDNAASKRLEENARKPPEPVKRTVET 691
Query: 602 ALRAEDRPQHPLVPSYPGKRPMFSPATLPSVRAN 703
A RAED P PG+RP +P P N
Sbjct: 692 AKRAEDMPPRRPSDGAPGRRPENAPQKRPVSTGN 725
>SB_40766| Best HMM Match : WD40 (HMM E-Value=1.19993e-41)
Length = 1487
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +1
Query: 271 VQWESVCRTSAWRTQRRTVVVIANSYSALTLCSPRTSL 384
+QW S C +S+++ +R ++ IA ++L+L TSL
Sbjct: 74 IQWHSTCYSSSYKKDKR-LLNIATDEASLSLRQAATSL 110
>SB_38784| Best HMM Match : Apo-VLDL-II (HMM E-Value=8.3)
Length = 439
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/69 (21%), Positives = 30/69 (43%)
Frame = +3
Query: 129 DHTSKAISATMSTYFQYPTPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVE 308
+H K +T YP P + +K + + P K L A S + R++ ++
Sbjct: 287 EHHRKNYPRLPATIRFYPDPSVAHRYRKQRRPVPVPGKRGLQATPSEELIIARIKRYAID 346
Query: 309 NTEENRRRY 335
+ ++ R +Y
Sbjct: 347 DRQKGRTKY 355
>SB_36428| Best HMM Match : MutS_V (HMM E-Value=2.1e-33)
Length = 689
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = -1
Query: 428 IVSLLVKGLVEQDHTRDVLGEHSVRAE*ELAITTTVLLC 312
+V+LLV G ++ V+G+ SV + + I TTVL C
Sbjct: 425 LVALLVFGQCDRQDETGVVGDISVVVDTRVIIDTTVLKC 463
>SB_18905| Best HMM Match : Nop (HMM E-Value=0)
Length = 194
Score = 27.9 bits (59), Expect = 9.1
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 6/49 (12%)
Frame = +3
Query: 168 YFQYPTPELQEELKKIAQAIVAPAKGILAA-----DEST-GTMGKRLQD 296
YF + ++++K A IVA AK LAA EST GT+GKRLQ+
Sbjct: 111 YFSPIVQNMPQDMRKKAARIVA-AKCTLAARVDSFHESTEGTIGKRLQE 158
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,277,947
Number of Sequences: 59808
Number of extensions: 573387
Number of successful extensions: 1706
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1683
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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