Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0961
         (600 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia nu...    71   2e-11
UniRef50_Q10126 Cluster: Uncharacterized protein F52C9.6; n=7; C...    35   1.7  
UniRef50_A6GQ36 Cluster: ErfK/YbiS/YcfS/YnhG; n=1; Limnobacter s...    34   2.9  
UniRef50_Q9CI32 Cluster: ABC transporter permease protein; n=3; ...    33   6.8  
UniRef50_UPI0000E4800E Cluster: PREDICTED: similar to protein F2...    32   9.0  
UniRef50_Q5T5X7 Cluster: Uncharacterized protein KIAA1553; n=15;...    32   9.0  

>UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia
           nubilalis|Rep: Reverse transcriptase - Ostrinia
           nubilalis (European corn borer)
          Length = 497

 Score = 70.9 bits (166), Expect = 2e-11
 Identities = 32/48 (66%), Positives = 38/48 (79%)
 Frame = +1

Query: 376 RPRTGKRSVGRSPTRWTDDLVKITGSRWMQGAMDRPHSRTSVGKAYVQ 519
           RPR G+RSVGR PTRWTDDLVK+ GS WMQ A DR   + S+G+A+VQ
Sbjct: 445 RPRAGRRSVGRPPTRWTDDLVKVAGSTWMQAAQDRSLWK-SLGEAFVQ 491


>UniRef50_Q10126 Cluster: Uncharacterized protein F52C9.6; n=7;
           Caenorhabditis elegans|Rep: Uncharacterized protein
           F52C9.6 - Caenorhabditis elegans
          Length = 279

 Score = 34.7 bits (76), Expect = 1.7
 Identities = 18/38 (47%), Positives = 21/38 (55%)
 Frame = +1

Query: 376 RPRTGKRSVGRSPTRWTDDLVKITGSRWMQGAMDRPHS 489
           RP   KR VGR+P RWTD L K   +R   G +  P S
Sbjct: 222 RPWNWKRYVGRTPMRWTDSLRKEITTRDADGEVITPWS 259


>UniRef50_A6GQ36 Cluster: ErfK/YbiS/YcfS/YnhG; n=1; Limnobacter sp.
           MED105|Rep: ErfK/YbiS/YcfS/YnhG - Limnobacter sp. MED105
          Length = 422

 Score = 33.9 bits (74), Expect = 2.9
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +2

Query: 416 LDGPTTW*KSLGHVGCRGQWTGRTPGHQLERPMFSASSVASRQSEMMMMIKQALSIGT 589
           +D P  W K LG  G  G W    P H + RP  ++       ++ ++ +K+ + IGT
Sbjct: 238 IDYPNAWDKRLGKTGY-GIWLHGMPKHYVSRPPKASDGCVVLANQDLLALKKFVDIGT 294


>UniRef50_Q9CI32 Cluster: ABC transporter permease protein; n=3;
           Lactococcus lactis|Rep: ABC transporter permease protein
           - Lactococcus lactis subsp. lactis (Streptococcus
           lactis)
          Length = 241

 Score = 32.7 bits (71), Expect = 6.8
 Identities = 18/70 (25%), Positives = 33/70 (47%)
 Frame = -1

Query: 300 IQNLAIQVAVFSRCYNSVYFGQETLRRTIVQLCQIILDPPFIQCSAITIIFF*HYQYEIM 121
           + +L++Q+A          F Q  +++    + QI+     I CS + I+   HY Y+  
Sbjct: 64  LTSLSVQIADHQSGKIYQLFVQRGIKKLFYIIAQIVSFMIIIFCSTLVILVVAHYAYDYE 123

Query: 120 YVKLMIFYLF 91
           + KL +  LF
Sbjct: 124 FPKLSLLILF 133


>UniRef50_UPI0000E4800E Cluster: PREDICTED: similar to protein
           F28E10.3 [imported] - Caenorhabditis elegans; n=4;
           Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
           protein F28E10.3 [imported] - Caenorhabditis elegans -
           Strongylocentrotus purpuratus
          Length = 824

 Score = 32.3 bits (70), Expect = 9.0
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 379 PRTGKRSVGRSPTRWTDDLVKITG-SRWMQGAMDR 480
           P  GKR+ GR   RW D+L +  G + W Q A++R
Sbjct: 385 PYEGKRNRGRQRKRWRDELQQFWGQTNWHQQALNR 419


>UniRef50_Q5T5X7 Cluster: Uncharacterized protein KIAA1553; n=15;
           Tetrapoda|Rep: Uncharacterized protein KIAA1553 - Homo
           sapiens (Human)
          Length = 828

 Score = 32.3 bits (70), Expect = 9.0
 Identities = 22/63 (34%), Positives = 29/63 (46%)
 Frame = +3

Query: 213 QLFGEVSLDRNKRNCSNARKQLLESLNFGCTTRPFTTYDYLIYIVKEVFIFSIKQTTYWQ 392
           +LF +V   R    C  A K+ LESL+             LI    EV+  S+K T  WQ
Sbjct: 277 ELFSDVDFSRGCSACGFAAKRKLESLHL-----------QLIRNYVEVYYPSVKDTAVWQ 325

Query: 393 AQC 401
           A+C
Sbjct: 326 AEC 328


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 635,119,728
Number of Sequences: 1657284
Number of extensions: 13260148
Number of successful extensions: 30530
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 29555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30519
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 42317807226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)