Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0961
         (600 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    25   0.37 
AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory recept...    24   1.1  
AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory recept...    24   1.1  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    23   1.5  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   2.0  
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    21   7.9  

>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 25.4 bits (53), Expect = 0.37
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 136 SVRNYVCEVNDFLFICKRHVKGCTDF 59
           S++ Y CE+  +   C+R+   C DF
Sbjct: 49  SLKQYTCELKLWWEFCQRNGHNCLDF 74


>AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory receptor
           candidate 56 protein.
          Length = 358

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 162 ITIIFF*HYQYEIMYVKLMIFYLFV 88
           +TIIFF  YQY      L I ++ V
Sbjct: 160 VTIIFFASYQYGTKTYSLFIVFMTV 184


>AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory receptor
           candidate 21 protein.
          Length = 386

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 162 ITIIFF*HYQYEIMYVKLMIFYLFV 88
           +TIIFF  YQY      L I ++ V
Sbjct: 160 VTIIFFASYQYGTKTYSLFIVFMTV 184


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 564 IIIIISDCLLATDDALN 514
           II++I DC L T  ALN
Sbjct: 245 IILVIFDCCLETVSALN 261


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +3

Query: 240 RNKRNCSNARKQLLESLNFGCTTRPFTTYDYLIYIVKEVFIFSIKQTTYW 389
           +NKR+ ++ +  +L+SL F C       Y Y + I   V +  +  + Y+
Sbjct: 30  KNKRSGASLQVGILDSLVFKCYNLRRIYYFYCVSITFNVHLLFLLCSGYF 79


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 268 LALLQFRLFRSRDTSPNNCTAL 203
           + LLQF++    + SP N T +
Sbjct: 409 VVLLQFQISIPEEASPTNSTTI 430


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,928
Number of Sequences: 336
Number of extensions: 3566
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15143945
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)