Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0961
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   6.4  
SPBC800.06 |brx1||ribosome biogenesis protein Brx1|Schizosacchar...    25   6.4  
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    25   6.4  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    25   8.5  

>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 201  GKAVQLFGEVSLDRNKRNCSNARKQLLESLNFGCTTRPF 317
            GKA+Q+F E   D N +N  N  +  +E+    CT + F
Sbjct: 1850 GKALQIFREKLKDLNCKNSMN--EMCIENFLMKCTRKYF 1886


>SPBC800.06 |brx1||ribosome biogenesis protein
           Brx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +1

Query: 115 HIHNFVLIMSKENNRDCAALNKRRVQ--NNLAKLYNCS 222
           H+ N ++ M   + +D    +K R+   N LA+LYNC+
Sbjct: 59  HLLNDLVSMMPHSKKDSKLDSKDRLYQLNELAELYNCN 96


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 201 GKAVQLFGEVSLDRNKRNCSNARKQLLESL 290
           GK++   GE+S D +K       +QLL SL
Sbjct: 527 GKSLYYAGELSFDISKLKAETEHQQLLRSL 556


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = -1

Query: 234 ETLRRTIVQLCQIILDPPFIQCSAITIIFF*HYQYE--IMYVKLMIF 100
           + +R  + Q C  + D     C  + I+F  H+Q    ++Y  +M F
Sbjct: 121 QKVRNILAQYCPWLTDERLQLCIELKILFMQHFQDSRLVLYTAVMSF 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,649,290
Number of Sequences: 5004
Number of extensions: 56055
Number of successful extensions: 123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)