BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0961 (600 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 02_04_0468 - 23172561-23174201 30 1.2 09_04_0696 - 19559227-19559622,19559710-19559862,19559957-195607... 28 5.0 09_02_0450 + 9468495-9468528,9468947-9469062,9470031-9470858,947... 28 5.0 11_02_0083 - 8116997-8117590,8118342-8118745,8119073-8119671,812... 28 6.6 03_01_0016 + 131141-131236,131743-132043,132125-132341,132440-13... 28 6.6 01_07_0248 + 42261373-42261609,42261733-42261905,42261986-422620... 28 6.6 01_06_1384 + 36888265-36889577,36889683-36889908 28 6.6 >02_04_0468 - 23172561-23174201 Length = 546 Score = 30.3 bits (65), Expect = 1.2 Identities = 10/24 (41%), Positives = 13/24 (54%) Frame = +1 Query: 397 SVGRSPTRWTDDLVKITGSRWMQG 468 ++GR P W DD RWM+G Sbjct: 411 AIGRDPASWGDDAAAFRPERWMRG 434 >09_04_0696 - 19559227-19559622,19559710-19559862,19559957-19560784, 19561727-19561842,19562286-19562319 Length = 508 Score = 28.3 bits (60), Expect = 5.0 Identities = 13/47 (27%), Positives = 23/47 (48%) Frame = +1 Query: 181 RRVQNNLAKLYNCSAKCLLTEINGIVATRENSYLNR*ILDVLQDRLQ 321 R++ + K K L E NG+ +T+ SYL R + + R++ Sbjct: 103 RKIDRVMEKHSGIGVKALTIEFNGLFSTKARSYLERWLQIAVTPRIE 149 >09_02_0450 + 9468495-9468528,9468947-9469062,9470031-9470858, 9470955-9471107,9471194-9471604 Length = 513 Score = 28.3 bits (60), Expect = 5.0 Identities = 13/47 (27%), Positives = 23/47 (48%) Frame = +1 Query: 181 RRVQNNLAKLYNCSAKCLLTEINGIVATRENSYLNR*ILDVLQDRLQ 321 R++ + K K L E NG+ +T+ SYL R + + R++ Sbjct: 103 RKIDRVMKKHSGIGVKALTIEFNGLFSTKARSYLERWLQIAVTPRIE 149 >11_02_0083 - 8116997-8117590,8118342-8118745,8119073-8119671, 8120226-8120266 Length = 545 Score = 27.9 bits (59), Expect = 6.6 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = +2 Query: 473 WTGRTPGHQLERPMFSASSVASRQSEMMMMIKQ-ALSIGTNPK 598 +T PG Q+ER + A+ V S S M + +L +GT P+ Sbjct: 18 YTASLPGAQMERRLLEAAMVGSATSMKEMAAQDPSLLLGTTPQ 60 >03_01_0016 + 131141-131236,131743-132043,132125-132341,132440-132773, 132883-132996,133065-133193,133293-133469,133555-133746, 134844-134981,135327-135559,135900-136003,136633-136727, 136817-137053,137801-137922,138252-138354,138750-138826, 138909-139017,139107-139253,139953-140000,140292-140492, 140589-140738,140917-141002,141088-141193,141278-141373, 141759-141911,142647-142819,142923-142986,144056-144193, 144548-144595,144690-144836,144907-144968,146540-146645, 147357-147461,147548-147679,147765-147974,148070-148171, 148261-148398 Length = 1729 Score = 27.9 bits (59), Expect = 6.6 Identities = 13/41 (31%), Positives = 21/41 (51%) Frame = -3 Query: 244 FRSRDTSPNNCTALPNYFGPAVYSVQRNHDYFLLTLSVRNY 122 + S +T PN C+ LP AV +QR+ + + + R Y Sbjct: 1381 YSSAETGPNKCSLLPKILLVAVRIIQRDSEEKKASFNPRPY 1421 >01_07_0248 + 42261373-42261609,42261733-42261905,42261986-42262058, 42262148-42262282,42262352-42262562,42262886-42263034, 42263169-42263267,42263821-42263989,42264176-42264308, 42264600-42264694,42264774-42264882,42265136-42265295, 42265433-42265594,42265814-42265985,42266254-42266402, 42266914-42266951,42267779-42267839,42267913-42268155, 42268233-42268315,42269521-42269609,42270449-42270495, 42270576-42270656,42270737-42270899,42271077-42271267, 42271691-42271762 Length = 1097 Score = 27.9 bits (59), Expect = 6.6 Identities = 16/45 (35%), Positives = 22/45 (48%) Frame = +3 Query: 225 EVSLDRNKRNCSNARKQLLESLNFGCTTRPFTTYDYLIYIVKEVF 359 EVSL +R R + E L TTR F T I+I+K ++ Sbjct: 326 EVSLLNQERIIETIRNAIEEKLMNSNTTRIFQTQINFIFIIKNIY 370 >01_06_1384 + 36888265-36889577,36889683-36889908 Length = 512 Score = 27.9 bits (59), Expect = 6.6 Identities = 16/50 (32%), Positives = 23/50 (46%) Frame = -3 Query: 304 VHPKFSDSSSCFLALLQFRLFRSRDTSPNNCTALPNYFGPAVYSVQRNHD 155 V K + A + R R+ P+N L N F +Y+VQR+HD Sbjct: 389 VEAKLDTEDTAEFAATEERYERAVSEEPDNSLLLSN-FAQFLYTVQRDHD 437 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,096,174 Number of Sequences: 37544 Number of extensions: 360086 Number of successful extensions: 773 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 755 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 773 length of database: 14,793,348 effective HSP length: 78 effective length of database: 11,864,916 effective search space used: 1435654836 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -