Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0961
         (600 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0468 - 23172561-23174201                                         30   1.2  
09_04_0696 - 19559227-19559622,19559710-19559862,19559957-195607...    28   5.0  
09_02_0450 + 9468495-9468528,9468947-9469062,9470031-9470858,947...    28   5.0  
11_02_0083 - 8116997-8117590,8118342-8118745,8119073-8119671,812...    28   6.6  
03_01_0016 + 131141-131236,131743-132043,132125-132341,132440-13...    28   6.6  
01_07_0248 + 42261373-42261609,42261733-42261905,42261986-422620...    28   6.6  
01_06_1384 + 36888265-36889577,36889683-36889908                       28   6.6  

>02_04_0468 - 23172561-23174201
          Length = 546

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 397 SVGRSPTRWTDDLVKITGSRWMQG 468
           ++GR P  W DD       RWM+G
Sbjct: 411 AIGRDPASWGDDAAAFRPERWMRG 434


>09_04_0696 -
           19559227-19559622,19559710-19559862,19559957-19560784,
           19561727-19561842,19562286-19562319
          Length = 508

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +1

Query: 181 RRVQNNLAKLYNCSAKCLLTEINGIVATRENSYLNR*ILDVLQDRLQ 321
           R++   + K      K L  E NG+ +T+  SYL R +   +  R++
Sbjct: 103 RKIDRVMEKHSGIGVKALTIEFNGLFSTKARSYLERWLQIAVTPRIE 149


>09_02_0450 +
           9468495-9468528,9468947-9469062,9470031-9470858,
           9470955-9471107,9471194-9471604
          Length = 513

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +1

Query: 181 RRVQNNLAKLYNCSAKCLLTEINGIVATRENSYLNR*ILDVLQDRLQ 321
           R++   + K      K L  E NG+ +T+  SYL R +   +  R++
Sbjct: 103 RKIDRVMKKHSGIGVKALTIEFNGLFSTKARSYLERWLQIAVTPRIE 149


>11_02_0083 -
           8116997-8117590,8118342-8118745,8119073-8119671,
           8120226-8120266
          Length = 545

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +2

Query: 473 WTGRTPGHQLERPMFSASSVASRQSEMMMMIKQ-ALSIGTNPK 598
           +T   PG Q+ER +  A+ V S  S   M  +  +L +GT P+
Sbjct: 18  YTASLPGAQMERRLLEAAMVGSATSMKEMAAQDPSLLLGTTPQ 60


>03_01_0016 + 131141-131236,131743-132043,132125-132341,132440-132773,
            132883-132996,133065-133193,133293-133469,133555-133746,
            134844-134981,135327-135559,135900-136003,136633-136727,
            136817-137053,137801-137922,138252-138354,138750-138826,
            138909-139017,139107-139253,139953-140000,140292-140492,
            140589-140738,140917-141002,141088-141193,141278-141373,
            141759-141911,142647-142819,142923-142986,144056-144193,
            144548-144595,144690-144836,144907-144968,146540-146645,
            147357-147461,147548-147679,147765-147974,148070-148171,
            148261-148398
          Length = 1729

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -3

Query: 244  FRSRDTSPNNCTALPNYFGPAVYSVQRNHDYFLLTLSVRNY 122
            + S +T PN C+ LP     AV  +QR+ +    + + R Y
Sbjct: 1381 YSSAETGPNKCSLLPKILLVAVRIIQRDSEEKKASFNPRPY 1421


>01_07_0248 +
           42261373-42261609,42261733-42261905,42261986-42262058,
           42262148-42262282,42262352-42262562,42262886-42263034,
           42263169-42263267,42263821-42263989,42264176-42264308,
           42264600-42264694,42264774-42264882,42265136-42265295,
           42265433-42265594,42265814-42265985,42266254-42266402,
           42266914-42266951,42267779-42267839,42267913-42268155,
           42268233-42268315,42269521-42269609,42270449-42270495,
           42270576-42270656,42270737-42270899,42271077-42271267,
           42271691-42271762
          Length = 1097

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +3

Query: 225 EVSLDRNKRNCSNARKQLLESLNFGCTTRPFTTYDYLIYIVKEVF 359
           EVSL   +R     R  + E L    TTR F T    I+I+K ++
Sbjct: 326 EVSLLNQERIIETIRNAIEEKLMNSNTTRIFQTQINFIFIIKNIY 370


>01_06_1384 + 36888265-36889577,36889683-36889908
          Length = 512

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -3

Query: 304 VHPKFSDSSSCFLALLQFRLFRSRDTSPNNCTALPNYFGPAVYSVQRNHD 155
           V  K     +   A  + R  R+    P+N   L N F   +Y+VQR+HD
Sbjct: 389 VEAKLDTEDTAEFAATEERYERAVSEEPDNSLLLSN-FAQFLYTVQRDHD 437


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,096,174
Number of Sequences: 37544
Number of extensions: 360086
Number of successful extensions: 773
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)