Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0961
         (600 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC131628-1|AAI31629.1|  828|Homo sapiens KIAA1553 protein.             32   1.3  
AL355586-3|CAI16110.1|  828|Homo sapiens RP11-59I9.2 protein.          32   1.3  
AB046773-1|BAB13379.1|  670|Homo sapiens KIAA1553 protein protein.     32   1.3  

>BC131628-1|AAI31629.1|  828|Homo sapiens KIAA1553 protein.
          Length = 828

 Score = 32.3 bits (70), Expect = 1.3
 Identities = 22/63 (34%), Positives = 29/63 (46%)
 Frame = +3

Query: 213 QLFGEVSLDRNKRNCSNARKQLLESLNFGCTTRPFTTYDYLIYIVKEVFIFSIKQTTYWQ 392
           +LF +V   R    C  A K+ LESL+             LI    EV+  S+K T  WQ
Sbjct: 277 ELFSDVDFSRGCSACGFAAKRKLESLHL-----------QLIRNYVEVYYPSVKDTAVWQ 325

Query: 393 AQC 401
           A+C
Sbjct: 326 AEC 328


>AL355586-3|CAI16110.1|  828|Homo sapiens RP11-59I9.2 protein.
          Length = 828

 Score = 32.3 bits (70), Expect = 1.3
 Identities = 22/63 (34%), Positives = 29/63 (46%)
 Frame = +3

Query: 213 QLFGEVSLDRNKRNCSNARKQLLESLNFGCTTRPFTTYDYLIYIVKEVFIFSIKQTTYWQ 392
           +LF +V   R    C  A K+ LESL+             LI    EV+  S+K T  WQ
Sbjct: 277 ELFSDVDFSRGCSACGFAAKRKLESLHL-----------QLIRNYVEVYYPSVKDTAVWQ 325

Query: 393 AQC 401
           A+C
Sbjct: 326 AEC 328


>AB046773-1|BAB13379.1|  670|Homo sapiens KIAA1553 protein protein.
          Length = 670

 Score = 32.3 bits (70), Expect = 1.3
 Identities = 22/63 (34%), Positives = 29/63 (46%)
 Frame = +3

Query: 213 QLFGEVSLDRNKRNCSNARKQLLESLNFGCTTRPFTTYDYLIYIVKEVFIFSIKQTTYWQ 392
           +LF +V   R    C  A K+ LESL+             LI    EV+  S+K T  WQ
Sbjct: 119 ELFSDVDFSRGCSACGFAAKRKLESLHL-----------QLIRNYVEVYYPSVKDTAVWQ 167

Query: 393 AQC 401
           A+C
Sbjct: 168 AEC 170


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,568,335
Number of Sequences: 237096
Number of extensions: 2001169
Number of successful extensions: 3653
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3650
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6297951520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)