Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0961
(600 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 34 0.089
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 34 0.089
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 34 0.089
AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical ... 34 0.089
AC103567-9|AAL35735.1| 204|Caenorhabditis elegans Hypothetical ... 31 0.63
Z29094-8|CAA82337.1| 254|Caenorhabditis elegans Hypothetical pr... 29 2.5
U39743-2|AAA80437.6| 310|Caenorhabditis elegans Carbonic anhydr... 29 3.3
Z68507-2|CAA92825.1| 475|Caenorhabditis elegans Hypothetical pr... 27 7.7
AF016433-5|AAN84877.1| 1039|Caenorhabditis elegans Hypothetical ... 27 7.7
AF016433-4|AAB65385.2| 1054|Caenorhabditis elegans Hypothetical ... 27 7.7
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 33.9 bits (74), Expect = 0.089
Identities = 18/38 (47%), Positives = 20/38 (52%)
Frame = +1
Query: 376 RPRTGKRSVGRSPTRWTDDLVKITGSRWMQGAMDRPHS 489
RP KR VGR P RWTD L K +R G + P S
Sbjct: 834 RPYGWKRPVGRPPMRWTDSLRKEITTRDADGEVITPWS 871
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 33.9 bits (74), Expect = 0.089
Identities = 18/38 (47%), Positives = 20/38 (52%)
Frame = +1
Query: 376 RPRTGKRSVGRSPTRWTDDLVKITGSRWMQGAMDRPHS 489
RP KR VGR P RWTD L K +R G + P S
Sbjct: 1009 RPYGWKRPVGRPPMRWTDSLRKEITTRDADGEVITPWS 1046
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 33.9 bits (74), Expect = 0.089
Identities = 18/38 (47%), Positives = 20/38 (52%)
Frame = +1
Query: 376 RPRTGKRSVGRSPTRWTDDLVKITGSRWMQGAMDRPHS 489
RP KR VGR P RWTD L K +R G + P S
Sbjct: 748 RPYGWKRPVGRPPMRWTDSLRKEITTRDADGEVITPWS 785
>AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical
protein Y32G9A.9 protein.
Length = 417
Score = 33.9 bits (74), Expect = 0.089
Identities = 18/38 (47%), Positives = 20/38 (52%)
Frame = +1
Query: 376 RPRTGKRSVGRSPTRWTDDLVKITGSRWMQGAMDRPHS 489
RP KR VGR P RWTD L K +R G + P S
Sbjct: 360 RPYGWKRPVGRPPMRWTDSLRKEITTRDADGEVITPWS 397
>AC103567-9|AAL35735.1| 204|Caenorhabditis elegans Hypothetical
protein Y51F10.8 protein.
Length = 204
Score = 31.1 bits (67), Expect = 0.63
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = +1
Query: 379 PRTGKRSVGRSPTRWTDDLVKITGSR 456
PR KR VGR P RW D L K +R
Sbjct: 146 PRDEKRPVGRPPMRWNDSLRKEVTTR 171
>Z29094-8|CAA82337.1| 254|Caenorhabditis elegans Hypothetical
protein C07A9.10 protein.
Length = 254
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +1
Query: 391 KRSVGRSPTRWTDDLVKITGSRWMQGAMDRPHS 489
KR VG+ P RWTD L K +R M + P S
Sbjct: 14 KRPVGKPPMRWTDSLRKEITTRDMGNNIITPWS 46
>U39743-2|AAA80437.6| 310|Caenorhabditis elegans Carbonic anhydrase
protein 5 protein.
Length = 310
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Frame = +1
Query: 97 IKNH*LHI----HNFVLIMSKENNRDCAALNKRRVQNNLAKL 210
I +H LH+ HN L+ S +N R LN RR+Q +KL
Sbjct: 242 ISSHQLHLLRQLHNKELVKSDKNYRPLQPLNGRRIQYRPSKL 283
>Z68507-2|CAA92825.1| 475|Caenorhabditis elegans Hypothetical
protein M18.3 protein.
Length = 475
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 282 ESLNFGCTTRPFTTYDYLIYIVKEVFIFSIKQT 380
ES+ FGC T+P T+ ++ +V +FS+ T
Sbjct: 94 ESMIFGCRTKPETSGKWIEIPFGQVTVFSLDST 126
>AF016433-5|AAN84877.1| 1039|Caenorhabditis elegans Hypothetical
protein C09H5.2b protein.
Length = 1039
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 14 KVALMSYLLGQLTQMKIGTSFHVSF 88
+VAL+ Y G L M++ SFHV F
Sbjct: 484 EVALLRYASGMLDAMEVRDSFHVVF 508
>AF016433-4|AAB65385.2| 1054|Caenorhabditis elegans Hypothetical
protein C09H5.2a protein.
Length = 1054
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 14 KVALMSYLLGQLTQMKIGTSFHVSF 88
+VAL+ Y G L M++ SFHV F
Sbjct: 484 EVALLRYASGMLDAMEVRDSFHVVF 508
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,766,966
Number of Sequences: 27780
Number of extensions: 319332
Number of successful extensions: 912
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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