Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0961
         (600 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15070.1 68417.m02315 DC1 domain-containing protein contains ...    29   2.4  
At1g56400.1 68414.m06486 F-box family protein contains Pfam:PF00...    29   2.4  
At4g23000.1 68417.m03318 calcineurin-like phosphoesterase family...    29   3.1  
At1g07550.1 68414.m00808 leucine-rich repeat protein kinase, put...    28   5.4  
At1g79920.2 68414.m09339 heat shock protein 70, putative / HSP70...    27   7.2  
At1g79920.1 68414.m09338 heat shock protein 70, putative / HSP70...    27   7.2  
At3g46340.1 68416.m05018 leucine-rich repeat protein kinase, put...    27   9.5  
At1g21326.1 68414.m02666 VQ motif-containing protein contains PF...    27   9.5  

>At4g15070.1 68417.m02315 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 889

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -3

Query: 178 YSVQRNHDYFLLTLSVRNYVCEVNDFLFICKRHVKGCTDFHLC 50
           + V+  HD  +LTLS       + ++  +C++ +K    F++C
Sbjct: 817 HKVRYKHDKHMLTLSYGEETSTIPNWCEVCEKKIKSKERFYMC 859


>At1g56400.1 68414.m06486 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 479

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 464 RGQWTGRTPGHQLER-PMFSASSVASRQSEM 553
           RG+W GR  G  LER  ++  SS+A  Q E+
Sbjct: 427 RGRWPGREHGPMLERVELYMDSSMAESQKEL 457


>At4g23000.1 68417.m03318 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 932

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 223 PNNCTALPNYFGPAVYSVQRNHDYFLLTLSVRNYVC 116
           P+  + L +Y GP  + +  NHD+F    +   YVC
Sbjct: 502 PDGVSDLKHYDGPQCFLIPGNHDWFDGLNTFMRYVC 537


>At1g07550.1 68414.m00808 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 864

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 423 DRRLGENHWVTLDAGGNGPAALQDI 497
           D  LG N W T+D G +G   L++I
Sbjct: 124 DLYLGPNIWTTIDMGKSGDGVLEEI 148


>At1g79920.2 68414.m09339 heat shock protein 70, putative / HSP70,
           putative contains Pfam profile: PF00012 Heat shock hsp70
           proteins; similar to heat-shock proteins GB:CAA94389,
           GB:AAD55461 [Arabidopsis thaliana]
          Length = 736

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +1

Query: 355 CLYLV*NRPRTGKRSVGRSPTRWTDDLVKITGSRWMQG 468
           C+ +   RP+       RS  RW   L  +T SRW +G
Sbjct: 664 CMKMGKMRPKVFMLQSSRSSRRWVTLLKCVTRSRWKEG 701


>At1g79920.1 68414.m09338 heat shock protein 70, putative / HSP70,
           putative contains Pfam profile: PF00012 Heat shock hsp70
           proteins; similar to heat-shock proteins GB:CAA94389,
           GB:AAD55461 [Arabidopsis thaliana]
          Length = 736

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +1

Query: 355 CLYLV*NRPRTGKRSVGRSPTRWTDDLVKITGSRWMQG 468
           C+ +   RP+       RS  RW   L  +T SRW +G
Sbjct: 664 CMKMGKMRPKVFMLQSSRSSRRWVTLLKCVTRSRWKEG 701


>At3g46340.1 68416.m05018 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 889

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +3

Query: 342 IVKEVFIFSIKQTTYWQAQCG-TVTY*MDRRLGENHWVTLDAGGNGPAALQDISW 503
           IVK+   + I+ T  +    G  ++   D  +G N W TLDAG      ++++++
Sbjct: 100 IVKQGKTYMIRATALYGNYDGLNISPKFDLYIGANFWTTLDAGEYLSGVVEEVNY 154


>At1g21326.1 68414.m02666 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 239

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -3

Query: 589 GSNRQGLFYHHHHLRLSTGH**CTEHRPFQLMSWSAAGPLPPASNVTQ*FSP 434
           G+  Q   YHHHH      H    +++ F+  S+  AG L P  N     SP
Sbjct: 145 GTMDQYYHYHHHHHHQEQQH----QNQGFERPSFHHAGILSPGPNSLPSVSP 192


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,776,534
Number of Sequences: 28952
Number of extensions: 287886
Number of successful extensions: 657
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)