Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0960
         (418 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    23   0.90 
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    23   1.2  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    22   2.8  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    22   2.8  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    21   4.8  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   4.8  
AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory recept...    21   6.4  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    20   8.4  

>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 23.4 bits (48), Expect = 0.90
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 74  RDTESFIDLIIKTGGGVGFRMRSP 145
           +D E  + L   +GGG G +MR P
Sbjct: 101 KDDEKCLSLERPSGGGKGKKMRKP 124


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -1

Query: 286 FLFYGFIPISIIPSQNAQ-YQGRIFPCNHFFTHISVFYRTVMTNHN*VRASHSKTNTSAS 110
           F+   F+  ++I  +N   Y  RIF  N  F HI    RT++   + V+    + N ++S
Sbjct: 131 FINLPFLEHNLIRLKNCVIYFNRIFGWNILFGHIFTVCRTLIYIDDNVKGLGKQYNIASS 190


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 126 PTPPPVFIMRSMNDSVSRRCLSGVITTQ 43
           P+PPP   +    D+ S+R  +   +TQ
Sbjct: 101 PSPPPEERLTPSKDASSKRIXTAFTSTQ 128


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 323 RLPASARLGLQCISFLW 273
           RLPA   +GL+C+  L+
Sbjct: 367 RLPALRSIGLKCLEHLF 383


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 66  LSGVITTQEFSWAIARRCFDL 4
           LSG I    FSW  +  C +L
Sbjct: 94  LSGAIACIGFSWIASPACTEL 114


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +2

Query: 53  ITPERQRRDTESFIDLIIKTGGGVGFRMRSPDL 151
           + P +QRR+  +F    +    G+  + R PD+
Sbjct: 122 VNPRKQRRERTTFTRAQLDLLEGLFAKTRYPDI 154


>AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory receptor
           candidate 28 protein.
          Length = 248

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -2

Query: 339 LMLRAQTTCVGTARSTVHFFFMASYLS 259
           LML     CV      VHF++  + +S
Sbjct: 94  LMLDKTGICVSNVFDFVHFYYPVATMS 120


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -2

Query: 222 GFFLAITSSHILAYSIGPS*RITTKSGLLIRKPT 121
           GF   + SS + AY+     +I T  G   RK T
Sbjct: 495 GFIWLVLSSTVRAYASRAFKKIVTYKGGKYRKVT 528


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,163
Number of Sequences: 336
Number of extensions: 1999
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9174063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)