Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0960
         (418 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    28   0.51 
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    24   8.2  
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    24   8.2  

>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 28.3 bits (60), Expect = 0.51
 Identities = 19/68 (27%), Positives = 34/68 (50%)
 Frame = +2

Query: 146 DLVVIRHDGPIEYANMCEEVIARKNPALILCVLARNYADRYEAIKKKCTVDRAVPTQVVC 325
           ++ +I H+GP+E      ++   KN  L+ C+LA    DR  +I        A+P  ++ 
Sbjct: 263 EINLIGHEGPVEVTAFNPKLFRDKNDKLV-CILACGGQDRSLSIWSS-----ALPRPLLS 316

Query: 326 ARNMSSKS 349
            +N+  KS
Sbjct: 317 CQNVFQKS 324


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 191 MCEEVIARKNPALILCVLARNYAD 262
           +C E++++KN A IL  +   YAD
Sbjct: 465 LCFELVSKKNEAWILHYVKSAYAD 488


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
           Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +2

Query: 347 SAMSIATKVAIQINCKLG 400
           +AMS+A +VA ++ C++G
Sbjct: 568 AAMSVAKRVAEEVGCRVG 585


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,734,855
Number of Sequences: 5004
Number of extensions: 33312
Number of successful extensions: 75
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)