Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0960
(418 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0704 - 26953474-26953643,26953770-26953801,26953915-269540... 31 0.49
11_03_0008 + 8901817-8902146,8903058-8903120,8903226-8903321,890... 30 0.65
12_01_0672 + 5731288-5731356,5732032-5732117,5732634-5732724,573... 29 1.5
01_06_1355 + 36610390-36610479,36611906-36612063,36612144-366125... 29 1.5
05_01_0318 - 2488529-2489196,2489773-2490372,2490620-2490773,249... 28 3.5
02_05_0851 + 32215521-32215803,32216371-32217746,32217873-32217938 27 4.6
09_06_0246 + 21837144-21838194,21838692-21840038,21840576-218406... 27 6.0
04_03_0463 - 16200690-16200986,16202010-16202258,16202562-162026... 27 6.0
06_03_0021 + 15520342-15520443,15522217-15522867,15522980-155231... 27 8.0
>03_05_0704 -
26953474-26953643,26953770-26953801,26953915-26954009,
26954107-26954180,26954283-26954412,26954522-26954585,
26954660-26954722,26954795-26954937,26955386-26955523,
26955610-26955731,26955805-26955976,26956559-26956630,
26956753-26956887,26956987-26957103,26957184-26957316,
26957455-26957561,26958060-26958077,26958235-26958379,
26958472-26958671,26960744-26961421
Length = 935
Score = 30.7 bits (66), Expect = 0.49
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +2
Query: 230 ILCVLARNYADRYEAIKKKCTVDRAVPTQVVCARNMSSKSAMSIATKVAIQINCKLGG 403
+L V+ + Y IK+ C + V TQ CA K +A+++N K+GG
Sbjct: 580 LLIVILTEISGSYGRIKRICETEVGVITQC-CAPKSLQKGGKQYLENLALKMNVKVGG 636
>11_03_0008 +
8901817-8902146,8903058-8903120,8903226-8903321,
8903924-8903971,8904558-8904629,8905373-8905431,
8905582-8905672,8905749-8905886
Length = 298
Score = 30.3 bits (65), Expect = 0.65
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 38 NSWVVITPERQRRDTESFIDLIIKTGGGVGFRMRSPD 148
NS+ V+ Q T SF+D +I+ G+G ++SP+
Sbjct: 210 NSYTVLKTSEQAPRTPSFVDQLIEAENGLGEVVKSPE 246
>12_01_0672 + 5731288-5731356,5732032-5732117,5732634-5732724,
5732886-5732935,5733339-5733408,5733508-5733617,
5733943-5734463,5734856-5734949,5735095-5735225,
5735241-5736274,5736383-5736457,5736615-5737104,
5737375-5738009,5738166-5738378
Length = 1222
Score = 29.1 bits (62), Expect = 1.5
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = -2
Query: 93 MNDSVSRRCLSGVITTQEFSWAIAR 19
+ +++ C SGVIT +++ WA+A+
Sbjct: 1157 VKENIRPLCKSGVITVEQYRWAVAK 1181
>01_06_1355 +
36610390-36610479,36611906-36612063,36612144-36612523,
36612600-36613583,36614228-36614292,36614946-36615024,
36615480-36615529,36616595-36616781,36617922-36617957,
36619226-36619348,36619466-36620386,36620506-36620636
Length = 1067
Score = 29.1 bits (62), Expect = 1.5
Identities = 19/64 (29%), Positives = 25/64 (39%)
Frame = +2
Query: 71 RRDTESFIDLIIKTGGGVGFRMRSPDLVVIRHDGPIEYANMCEEVIARKNPALILCVLAR 250
RR +D + G+GF P+ P+ ANM A N +L L R
Sbjct: 355 RRTVPLTVDTRMLVTVGLGFSSCQPEQTQCNRSAPVVLANMNNVSFALPNTVSMLEALYR 414
Query: 251 NYAD 262
N AD
Sbjct: 415 NTAD 418
>05_01_0318 -
2488529-2489196,2489773-2490372,2490620-2490773,
2490996-2491085,2491926-2492061,2492159-2492418,
2493448-2493846,2494482-2494661,2494728-2494922,
2496614-2496678,2497186-2497321,2497442-2497483,
2498351-2498689
Length = 1087
Score = 27.9 bits (59), Expect = 3.5
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +2
Query: 71 RRDTESFIDLIIKTGGGVGFRMRSPDLVVI 160
++D+E F+ L+ GG+G +++ D V+I
Sbjct: 770 KKDSEYFLFLLSTRAGGLGLNLQTADTVII 799
>02_05_0851 + 32215521-32215803,32216371-32217746,32217873-32217938
Length = 574
Score = 27.5 bits (58), Expect = 4.6
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 173 PIEYANMCEEVIARKNPALILCVLARNYAD 262
P Y NM + R NPA + +A +Y+D
Sbjct: 256 PESYGNMLKNKAIRSNPAFLYLHMAHDYSD 285
>09_06_0246 +
21837144-21838194,21838692-21840038,21840576-21840656,
21842740-21842924
Length = 887
Score = 27.1 bits (57), Expect = 6.0
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +2
Query: 71 RRDTESFIDLIIKTGGGVGFRMRSPDLVVIRH-DGPIEYANMCEEV 205
R ++ L+ GGG R R P L ++RH D P + E+
Sbjct: 104 RVHSDQVYHLVYHAGGGGDSRRRRPSLTLVRHPDRPFHRCHYLSEL 149
>04_03_0463 -
16200690-16200986,16202010-16202258,16202562-16202697,
16203150-16203368,16204137-16204515,16205010-16205253
Length = 507
Score = 27.1 bits (57), Expect = 6.0
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = -3
Query: 239 RTVSGQDFSLQSLLHTY*RILSDRHDESQLSQGFSFENQHL 117
R VSG + LL Y HDE +L + SF QHL
Sbjct: 93 RFVSGITNDPRGLLSLYNAAHLLTHDEPELEEAISFATQHL 133
>06_03_0021 +
15520342-15520443,15522217-15522867,15522980-15523186,
15523698-15523913,15523992-15524214,15525052-15525299,
15525385-15525563,15525803-15526056,15526237-15526388
Length = 743
Score = 26.6 bits (56), Expect = 8.0
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 140 SPDLVVIRHDGPIEYANMCEEVIARKN 220
+PD++V+ H GPI E ++ R N
Sbjct: 684 NPDIIVLCHGGPISGPQEAEFILKRTN 710
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,531,837
Number of Sequences: 37544
Number of extensions: 223944
Number of successful extensions: 522
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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