Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0960
         (418 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9279| Best HMM Match : Piwi (HMM E-Value=0)                         94   5e-20
SB_33705| Best HMM Match : No HMM Matches (HMM E-Value=.)              77   8e-15
SB_49310| Best HMM Match : Piwi (HMM E-Value=4.9e-33)                  36   0.010
SB_46599| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_4907| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.6  
SB_22285| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.7  
SB_29237| Best HMM Match : I-set (HMM E-Value=0)                       27   8.2  

>SB_9279| Best HMM Match : Piwi (HMM E-Value=0)
          Length = 941

 Score = 93.9 bits (223), Expect = 5e-20
 Identities = 45/140 (32%), Positives = 71/140 (50%), Gaps = 1/140 (0%)
 Frame = +2

Query: 2   MRSKHLLAIAQLNSWVVITPERQRRDTESFIDLIIKTGGGVGFRMRSPDLVVIRHDGPIE 181
           +R   L +   L +WV++   R       F   + +  G +G     P +V +  D    
Sbjct: 400 IRGAPLHSTVNLENWVIVHTNRDSGVATDFQQTLARVCGPMGINTTKPRMVPLNDDRTDS 459

Query: 182 YANMCEEVIARKNPALILCVLARNYADRYEAIKKKCTVDRAVPTQVVCARNMSSKS-AMS 358
           Y       I    P +++ ++  N  DRY++IKK C +++ VP+QVV +R +S K   MS
Sbjct: 460 YLKALSNEIQADFPQIVVTIVPSNRKDRYDSIKKLCCLEKGVPSQVVVSRTLSKKQMLMS 519

Query: 359 IATKVAIQINCKLGGSPWTV 418
           + TK+ IQ+NCKLGG  W V
Sbjct: 520 VCTKIGIQLNCKLGGEAWAV 539


>SB_33705| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 846

 Score = 76.6 bits (180), Expect = 8e-15
 Identities = 37/135 (27%), Positives = 70/135 (51%), Gaps = 1/135 (0%)
 Frame = +2

Query: 17  LLAIAQLNSWVVITPERQRRDTESFIDLIIKTGGGVGFRMRSPDLVVIRHDGPIEYANMC 196
           +++   LN+W+V   +R       F+  + K    +G ++  P +  +R D    Y    
Sbjct: 171 VISAVNLNNWMVFFTQRDSGKANDFVQTMNKCAPAMGIQVNQPKMNQLRDDRTETYLRSI 230

Query: 197 EEVIARKNPALILCVLARNYADRYEAIKKKCTVDRAVPTQVVCARNMSSKSAM-SIATKV 373
            E +      +++ +   +  DRY A+KK C V+  VP+QV+ ++ +S+ + + S+  K+
Sbjct: 231 RENL-HPQVQVVVVIFPTSRDDRYAAVKKLCCVESPVPSQVIISKTISNPTKLRSVVQKI 289

Query: 374 AIQINCKLGGSPWTV 418
           A+QIN KLGG  W +
Sbjct: 290 ALQINVKLGGELWAL 304


>SB_49310| Best HMM Match : Piwi (HMM E-Value=4.9e-33)
          Length = 952

 Score = 36.3 bits (80), Expect = 0.010
 Identities = 14/47 (29%), Positives = 28/47 (59%)
 Frame = +2

Query: 158 IRHDGPIEYANMCEEVIARKNPALILCVLARNYADRYEAIKKKCTVD 298
           +++D    Y      +I  +NP++++ ++  N  DRY+AIKK C ++
Sbjct: 584 LQNDQINSYLMALRGLIREENPSMVVVIVPTNRKDRYDAIKKLCCIE 630


>SB_46599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4482

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 179 LSDRHDESQLSQGFSFENQHLRQFLL 102
           LSDR D S + +GF +EN  +R+ L+
Sbjct: 594 LSDREDVSLILKGFDYENAEVRKSLV 619


>SB_4907| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 792

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 15/62 (24%), Positives = 32/62 (51%)
 Frame = +2

Query: 167 DGPIEYANMCEEVIARKNPALILCVLARNYADRYEAIKKKCTVDRAVPTQVVCARNMSSK 346
           DG + +   C E+++ KN  L   + ++ + +  E +KK    D+ + T+   A +M+ K
Sbjct: 308 DGKL-FCLACREIVSSKNSILTTHLASKKHGNGKEKLKKSKLKDQTI-TEAFRAADMTQK 365

Query: 347 SA 352
            +
Sbjct: 366 DS 367


>SB_22285| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 194 CEEVIARKNPALILCVLARNYADRYEAIKKKCT 292
           C+EV  ++ P  +L VL RN +    AIK+ CT
Sbjct: 11  CDEV--KRKPNRVLGVLQRNLSSCSRAIKEHCT 41


>SB_29237| Best HMM Match : I-set (HMM E-Value=0)
          Length = 869

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 2/97 (2%)
 Frame = +2

Query: 125 GFRMRSPDLVVIRHDGPIEYANMCEEVIARKNPALILCVLARNYADRYEAIKKKCTVDRA 304
           G ++R  D V++  DG +      +E            +  RNY +   A         A
Sbjct: 74  GNKIRPTDRVIVNQDGSLSIIATQKEDAGEYICVAKARMNKRNYVESSRAA--------A 125

Query: 305 VPTQVVC--ARNMSSKSAMSIATKVAIQINCKLGGSP 409
           +  Q +C  A+  SS S       + IQ+ CK  G P
Sbjct: 126 LEVQSICEAAKIASSPSQSLFPAGILIQLRCKCNGMP 162


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,301,562
Number of Sequences: 59808
Number of extensions: 266319
Number of successful extensions: 664
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)