Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0960
(418 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73906-6|CAA98113.1| 824|Caenorhabditis elegans Hypothetical pr... 49 1e-06
U50068-5|AAB37734.1| 722|Caenorhabditis elegans Temporarily ass... 45 3e-05
AL132895-1|CAC14399.1| 601|Caenorhabditis elegans Hypothetical ... 33 0.11
U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical pr... 31 0.44
Z49128-2|CAA88959.1| 848|Caenorhabditis elegans Hypothetical pr... 29 1.8
AF039051-8|AAB94268.3| 309|Caenorhabditis elegans Serpentine re... 28 3.1
Z81462-7|CAB03845.1| 1008|Caenorhabditis elegans Hypothetical pr... 27 5.5
Z81457-12|CAB03819.1| 1008|Caenorhabditis elegans Hypothetical p... 27 5.5
AF286900-1|AAG01333.1| 1008|Caenorhabditis elegans sex determini... 27 5.5
Z81489-14|CAN86572.1| 420|Caenorhabditis elegans Hypothetical p... 27 7.2
Z81489-13|CAB04012.1| 426|Caenorhabditis elegans Hypothetical p... 27 7.2
Z81087-2|CAN86636.1| 420|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z81087-1|CAB03122.1| 426|Caenorhabditis elegans Hypothetical pr... 27 7.2
AF003145-3|AAB57717.1| 751|Caenorhabditis elegans Cpeb polya bi... 27 7.2
AC006673-12|AAF39921.1| 494|Caenorhabditis elegans Cytochrome p... 27 7.2
U67948-4|AAM51500.1| 688|Caenorhabditis elegans Hypothetical pr... 26 9.5
U67948-3|AAM51499.1| 1077|Caenorhabditis elegans Hypothetical pr... 26 9.5
AF003390-2|AAP31432.1| 341|Caenorhabditis elegans Hypothetical ... 26 9.5
AF003390-1|AAB54271.2| 473|Caenorhabditis elegans Hypothetical ... 26 9.5
>Z73906-6|CAA98113.1| 824|Caenorhabditis elegans Hypothetical
protein D2030.6 protein.
Length = 824
Score = 49.2 bits (112), Expect = 1e-06
Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 13/143 (9%)
Frame = +2
Query: 29 AQLNSWVVITPERQRRD--TESFIDLIIKTGGGVGFRMRSPDLVVIRHDGPIEYANMCEE 202
+ + +W+VI P ++ FI+ + G + ++ P V IR P +Y +
Sbjct: 428 SNMTNWIVIGPGSGNSGLLSQKFIEEARRLGKILQVQLGEPMCVPIRGISPNDYLEGVKG 487
Query: 203 VIAR---KNPALILCVLARNYADRYEAIKKKCTVDRAVPTQVVCARNMSSKS-------- 349
I + ++ +++ +LA + RY+++KK V+ +P Q V R ++ KS
Sbjct: 488 AIKQVDGEDIHMLVVMLADDNKTRYDSLKKFLCVECPIPNQCVNLRTLAGKSKDGGENKN 547
Query: 350 AMSIATKVAIQINCKLGGSPWTV 418
SI K+ +Q+ CK GG+ W V
Sbjct: 548 LGSIVLKIVLQMICKTGGALWKV 570
>U50068-5|AAB37734.1| 722|Caenorhabditis elegans Temporarily
assigned gene nameprotein 292 protein.
Length = 722
Score = 44.8 bits (101), Expect = 3e-05
Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 13/143 (9%)
Frame = +2
Query: 29 AQLNSWVVITPERQRRD--TESFIDLIIKTGGGVGFRMRSPDLVVIRHDGPIEYANMCEE 202
+ + +W+VI P + FI G + ++ P V I P +Y +
Sbjct: 326 SNMTNWIVIGPGSGNSGLLAQKFIAEARNLGRTLQVQLGEPMCVKINGISPNDYLEGLKA 385
Query: 203 VIARKNPA---LILCVLARNYADRYEAIKKKCTVDRAVPTQVVCARNMSSKS-------- 349
I + +++ +LA + RY+++KK V+ +P Q V R ++ KS
Sbjct: 386 AIKSVDGEEIHMLVVMLADDNKTRYDSLKKYLCVECPIPNQCVNLRTLAGKSKDGGENKN 445
Query: 350 AMSIATKVAIQINCKLGGSPWTV 418
SI K+ +Q+ CK GG+ W V
Sbjct: 446 LGSIVLKIVLQMICKTGGALWKV 468
>AL132895-1|CAC14399.1| 601|Caenorhabditis elegans Hypothetical
protein Y59A8A.1 protein.
Length = 601
Score = 32.7 bits (71), Expect = 0.11
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 4/99 (4%)
Frame = +2
Query: 80 TESFIDLIIKTGGGVGFRM---RSPDLVVIRHDGPIEYANMCEEVIARKNPALILC-VLA 247
T S DL ++ G FR P L+ + C E++ P L+L ++
Sbjct: 369 TMSRADLKLQVSGNGTFRKLLESEPQLIELLGSYTSSRFGRCFEIMRSVKPRLLLDPFIS 428
Query: 248 RNYADRYEAIKKKCTVDRAVPTQVVCARNMSSKSAMSIA 364
RN + +E I++KC + P + M+ MS A
Sbjct: 429 RNVDELFEKIRQKCVLQYLQPYSTIKMATMAEAVGMSSA 467
>U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical protein
B0207.5 protein.
Length = 3279
Score = 30.7 bits (66), Expect = 0.44
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +2
Query: 179 EYANMCEEVIARKNPALILCVLARNYA--DRYEAIKKKCTVDRAVP 310
EY CE V+ RK P L + N + Y KKKC +R P
Sbjct: 1035 EYKKKCESVLERKTPKLDCDDVDTNKLSNEEYRMYKKKCGKERHTP 1080
>Z49128-2|CAA88959.1| 848|Caenorhabditis elegans Hypothetical
protein M03C11.2 protein.
Length = 848
Score = 28.7 bits (61), Expect = 1.8
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -2
Query: 129 KPTPPPVFIMRSMNDSVSRRCLSGVITTQE 40
KP P P+F ++S D+++ +C G I ++
Sbjct: 518 KPVPSPLFSLKSFIDALTNKCEDGRIIVEK 547
>AF039051-8|AAB94268.3| 309|Caenorhabditis elegans Serpentine
receptor, class x protein7 protein.
Length = 309
Score = 27.9 bits (59), Expect = 3.1
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -1
Query: 271 FIPISIIPSQNAQYQGRIFPCNHFFTHISVFYRTVMTNHN 152
FIPI + S A + IFPC F IS+ +T N
Sbjct: 128 FIPIIAVASAAATFSQYIFPCCIFIGDISIMSYMAVTIPN 167
>Z81462-7|CAB03845.1| 1008|Caenorhabditis elegans Hypothetical
protein C04H5.6 protein.
Length = 1008
Score = 27.1 bits (57), Expect = 5.5
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +2
Query: 347 SAMSIATKVAIQINCKLG 400
+AMS+A +VA ++ CKLG
Sbjct: 422 AAMSVAARVADEVGCKLG 439
>Z81457-12|CAB03819.1| 1008|Caenorhabditis elegans Hypothetical
protein C04H5.6 protein.
Length = 1008
Score = 27.1 bits (57), Expect = 5.5
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +2
Query: 347 SAMSIATKVAIQINCKLG 400
+AMS+A +VA ++ CKLG
Sbjct: 422 AAMSVAARVADEVGCKLG 439
>AF286900-1|AAG01333.1| 1008|Caenorhabditis elegans sex determining
protein MOG-4 protein.
Length = 1008
Score = 27.1 bits (57), Expect = 5.5
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +2
Query: 347 SAMSIATKVAIQINCKLG 400
+AMS+A +VA ++ CKLG
Sbjct: 422 AAMSVAARVADEVGCKLG 439
>Z81489-14|CAN86572.1| 420|Caenorhabditis elegans Hypothetical
protein F53E4.1b protein.
Length = 420
Score = 26.6 bits (56), Expect = 7.2
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = -1
Query: 313 RRHGSVYS---AFLFYGFIPISIIPSQNAQYQGRIFP 212
RRH SV S +LF G +P+ P Y G I P
Sbjct: 310 RRHCSVVSNGKVYLFGGTMPLPCHPLSTTNYNGMISP 346
>Z81489-13|CAB04012.1| 426|Caenorhabditis elegans Hypothetical
protein F53E4.1a protein.
Length = 426
Score = 26.6 bits (56), Expect = 7.2
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = -1
Query: 313 RRHGSVYS---AFLFYGFIPISIIPSQNAQYQGRIFP 212
RRH SV S +LF G +P+ P Y G I P
Sbjct: 316 RRHCSVVSNGKVYLFGGTMPLPCHPLSTTNYNGMISP 352
>Z81087-2|CAN86636.1| 420|Caenorhabditis elegans Hypothetical
protein F53E4.1b protein.
Length = 420
Score = 26.6 bits (56), Expect = 7.2
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = -1
Query: 313 RRHGSVYS---AFLFYGFIPISIIPSQNAQYQGRIFP 212
RRH SV S +LF G +P+ P Y G I P
Sbjct: 310 RRHCSVVSNGKVYLFGGTMPLPCHPLSTTNYNGMISP 346
>Z81087-1|CAB03122.1| 426|Caenorhabditis elegans Hypothetical
protein F53E4.1a protein.
Length = 426
Score = 26.6 bits (56), Expect = 7.2
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = -1
Query: 313 RRHGSVYS---AFLFYGFIPISIIPSQNAQYQGRIFP 212
RRH SV S +LF G +P+ P Y G I P
Sbjct: 316 RRHCSVVSNGKVYLFGGTMPLPCHPLSTTNYNGMISP 352
>AF003145-3|AAB57717.1| 751|Caenorhabditis elegans Cpeb polya
binding family protein 3 protein.
Length = 751
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 337 HVTSADYLRRHGSVYSAFLFYGFIPISIIPS 245
H TS++ + Y A L+YGFIP PS
Sbjct: 711 HPTSSNISQPQQPYYGANLYYGFIPPQQHPS 741
>AC006673-12|AAF39921.1| 494|Caenorhabditis elegans Cytochrome p450
family protein 35A3 protein.
Length = 494
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +2
Query: 44 WVVITPERQRRDTESFIDLIIKTGGGVGFRMRSPDLVVIRHDGPIEYAN 190
WV P D E+ ++ +K GG ++ +P + IR D I + N
Sbjct: 69 WVGPVPYVSIADFETSHEVFVKNGGKYADKLHAPIMRDIRKDKGIAFTN 117
>U67948-4|AAM51500.1| 688|Caenorhabditis elegans Hypothetical
protein M02E1.1b protein.
Length = 688
Score = 26.2 bits (55), Expect = 9.5
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = -1
Query: 172 TVMTNHN*VRASHSKTNTSASFYYEIN-E*LCVTALSFWGDHYPRV*LGNSQEMLRSH 2
T++T H R K NT SFY E + + +C A F+ + ++ + E+ H
Sbjct: 243 TILTTHFAKRTGELKINTMNSFYKEYSRDDICTEATFFFLPNISKLGMAMFAEVYACH 300
>U67948-3|AAM51499.1| 1077|Caenorhabditis elegans Hypothetical
protein M02E1.1a protein.
Length = 1077
Score = 26.2 bits (55), Expect = 9.5
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = -1
Query: 172 TVMTNHN*VRASHSKTNTSASFYYEIN-E*LCVTALSFWGDHYPRV*LGNSQEMLRSH 2
T++T H R K NT SFY E + + +C A F+ + ++ + E+ H
Sbjct: 243 TILTTHFAKRTGELKINTMNSFYKEYSRDDICTEATFFFLPNISKLGMAMFAEVYACH 300
>AF003390-2|AAP31432.1| 341|Caenorhabditis elegans Hypothetical
protein R155.1b protein.
Length = 341
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -1
Query: 355 HSRLATHVTSADYLR-RHGSVYSAFLFYGFIPISIIPSQNAQY 230
+++LA+HV + YL HG FL +G + + + +QN Y
Sbjct: 202 NNKLASHVITLSYLAIWHGYHLGYFLLFG-VELGCVQAQNQLY 243
>AF003390-1|AAB54271.2| 473|Caenorhabditis elegans Hypothetical
protein R155.1a protein.
Length = 473
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -1
Query: 355 HSRLATHVTSADYLR-RHGSVYSAFLFYGFIPISIIPSQNAQY 230
+++LA+HV + YL HG FL +G + + + +QN Y
Sbjct: 334 NNKLASHVITLSYLAIWHGYHLGYFLLFG-VELGCVQAQNQLY 375
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,769,109
Number of Sequences: 27780
Number of extensions: 192671
Number of successful extensions: 533
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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