Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0960
         (418 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   1.0  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   1.0  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   3.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   3.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.4  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   7.4  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 323 RLPASARLGLQCISFLW 273
           RLPA   +GL+C+ +L+
Sbjct: 387 RLPAIRSIGLKCLEYLF 403


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 323 RLPASARLGLQCISFLW 273
           RLPA   +GL+C+ +L+
Sbjct: 387 RLPAIRSIGLKCLEYLF 403


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +1

Query: 346 VGYVNCYKSCYSN 384
           +GY  C  SC++N
Sbjct: 100 IGYATCVLSCWTN 112


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +1

Query: 346 VGYVNCYKSCYSN 384
           +GY  C  SC++N
Sbjct: 153 IGYATCVLSCWTN 165


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 206 IARKNPALILCVLARNYADRYEAIKKKCT 292
           +   NP L   VL + Y +  E+ + +CT
Sbjct: 674 LTETNPKLARSVLYKIYLNTMESHEVRCT 702


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 33  WAIARRCFDLI 1
           WAI R+CF  I
Sbjct: 189 WAIDRQCFQTI 199


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,254
Number of Sequences: 438
Number of extensions: 2643
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)