Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0960
         (418 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30780.1 68417.m04361 expressed protein hypothetical protein ...    31   0.41 
At1g13090.1 68414.m01518 cytochrome P450 71B28, putative (CYP71B...    27   3.8  
At4g22620.1 68417.m03262 auxin-responsive family protein auxin-i...    27   5.1  
At4g31500.1 68417.m04474 cytochrome P450 83B1 (CYP83B1) Identica...    27   6.7  
At1g29320.1 68414.m03584 transducin family protein / WD-40 repea...    27   6.7  
At2g17130.2 68415.m01978 isocitrate dehydrogenase subunit 2 / NA...    26   8.9  

>At4g30780.1 68417.m04361 expressed protein hypothetical protein
           F27D4.1 -  Arabidopsis thaliana,PID:g4115371
          Length = 589

 Score = 30.7 bits (66), Expect = 0.41
 Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 2/102 (1%)
 Frame = +2

Query: 104 IKTGG-GVGFRMRSPDLVVIRHDGPIEYANMCEEVIARKNPALILCVLARNYADRYEA-I 277
           +K G  G G +  S  +      GP       E++ A   PA +L +    Y  RYE  +
Sbjct: 102 LKAGALGSGLKRESKTIAAAASVGPTLAPGSIEKLKASNFPASLLKIGQWEYKSRYEGDL 161

Query: 278 KKKCTVDRAVPTQVVCARNMSSKSAMSIATKVAIQINCKLGG 403
             KC   +      V  + + SK  +  +  +A++ NC   G
Sbjct: 162 VAKCYFAKHKLVWEVLEQGLKSKIEIQWSDIMALKANCPEDG 203


>At1g13090.1 68414.m01518 cytochrome P450 71B28, putative (CYP71B28)
           Identical to Cytochrome P450 (SP:Q9SAE3) [Arabidopsis
           thaliana]; strong similarity to gb|X97864 cytochrome
           P450 from Arabidopsis thaliana and is a member of the
           PF|00067 Cytochrome P450 family. ESTs gb|N65665,
           gb|T14112, gb|T76255, gb|T20906 and gb|AI100027 come
           from this gene
          Length = 490

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -1

Query: 361 N*HSRLATHVTSADYL-RRHGSVYSAFLFYGFIPISIIPSQNA 236
           N H R   H  ++  L  ++G +   FL YGF+P+ +I S+ A
Sbjct: 40  NLHQRRELHPRNSRNLSEKYGPI--VFLRYGFVPVVVISSKEA 80


>At4g22620.1 68417.m03262 auxin-responsive family protein
           auxin-induced protein 10A, Glycine max., PIR2:JQ1099
          Length = 160

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = -2

Query: 108 FIMRSM-NDSVSRRCLSGVITTQEFSWAIARRC 13
           +I+RS  N +  R+CL+G++      +++ARRC
Sbjct: 19  WIIRSRRNQTGKRQCLTGILNPVTKIYSLARRC 51


>At4g31500.1 68417.m04474 cytochrome P450 83B1 (CYP83B1) Identical
           to Cytochrome P450 (SP:O65782 )[Arabidopsis thaliana]
          Length = 499

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
 Frame = +2

Query: 53  ITPERQRRDTESFIDLIIKTGGGVGFRMRSPDLVVIRHDGPIEYANMCEEVIARKNPALI 232
           + P R +++TESFIDL+++           P  +   H+     A + + V+   + A  
Sbjct: 255 LDPNRPKQETESFIDLLMQ------IYKDQPFSIKFTHEN--VKAMILDIVVPGTDTAAA 306

Query: 233 LCVLARNYADRY-EAIKK 283
           + V A  Y  +Y EA+KK
Sbjct: 307 VVVWAMTYLIKYPEAMKK 324


>At1g29320.1 68414.m03584 transducin family protein / WD-40 repeat
           family protein contains 3 WD-40 repeats (PF00400);
           similar to meiotic recombination protein REC14
           (GI:11139242) [Homo sapiens]; similar to unknown protein
           GI:13623493 [Homo sapiens]
          Length = 468

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 131 RMRSPDLVVIRHDGPIEYANMC 196
           R+R+P L V R DG +E  N C
Sbjct: 62  RLRNPLLAVARKDGNVEVINPC 83


>At2g17130.2 68415.m01978 isocitrate dehydrogenase subunit 2 / NAD+
           isocitrate dehydrogenase subunit 2 nearly identical to
           NAD+ dependent isocitrate dehydrogenase subunit 2
           [Arabidopsis thaliana] GI:1766048
          Length = 363

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
 Frame = +2

Query: 119 GVGFRMRSPDLVVIRHDGPIEYANMCEEVIARKNPALILC-VLARNYADRYEAIKKKCTV 295
           G+  R  + D+VVIR +   EYA +  EV+     +L  C      YA  Y  +  +  V
Sbjct: 133 GLASRHENVDIVVIRENTEGEYAGLEHEVVPGVVESLKFCSERIAKYAFEYAYLNNRKKV 192

Query: 296 DRAVPTQVV-CARNMSSKSAMSIATK 370
                  ++  A  +  +S   +A K
Sbjct: 193 TAVHKANIMKLADGLFLESCQEVAKK 218


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,155,872
Number of Sequences: 28952
Number of extensions: 175207
Number of successful extensions: 436
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 635399168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)