Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0958
(593 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5MGK5 Cluster: Ribosomal protein 23; n=2; Endopterygot... 265 6e-70
UniRef50_P09180 Cluster: 60S ribosomal protein L4; n=96; Eukaryo... 228 7e-59
UniRef50_P36578 Cluster: 60S ribosomal protein L4; n=70; Eukaryo... 211 1e-53
UniRef50_Q00UB0 Cluster: Ribosomal protein RPL1/RPL2/RL4L4; n=1;... 175 6e-43
UniRef50_Q1KYM6 Cluster: RPL4; n=1; Streblomastix strix|Rep: RPL... 150 3e-35
UniRef50_Q0U8Q3 Cluster: Putative uncharacterized protein; n=1; ... 149 6e-35
UniRef50_Q3SEA6 Cluster: Ribosomal protein L4, putative; n=2; Ol... 147 1e-34
UniRef50_Q95YH2 Cluster: Ribosomal protein L4; n=1; Paramecium c... 141 1e-32
UniRef50_UPI0000499FAF Cluster: 60S ribosomal protein L4; n=5; E... 141 1e-32
UniRef50_A3FPV6 Cluster: 60S ribosomal protein-like, putative; n... 134 1e-30
UniRef50_A7E7X3 Cluster: 60S ribosomal protein L4; n=2; Scleroti... 132 8e-30
UniRef50_Q4XUM2 Cluster: 60S ribosomal subunit protein L4/L1, pu... 131 1e-29
UniRef50_A7R5H8 Cluster: Chromosome undetermined scaffold_974, w... 128 1e-28
UniRef50_A2E1Z6 Cluster: Ribosomal protein, putative; n=3; Trich... 122 5e-27
UniRef50_Q7R0P2 Cluster: GLP_79_45017_44067; n=1; Giardia lambli... 121 1e-26
UniRef50_UPI00005A2ACC Cluster: PREDICTED: similar to ribosomal ... 90 2e-26
UniRef50_Q8SRC2 Cluster: 60S RIBOSOMAL PROTEIN L4; n=1; Encephal... 116 3e-25
UniRef50_Q4FXU6 Cluster: Ribosomal protein L1a, putative; n=1; L... 93 3e-18
UniRef50_Q8TY91 Cluster: 50S ribosomal protein L4P; n=13; Euryar... 92 1e-17
UniRef50_O28355 Cluster: 50S ribosomal protein L4P; n=9; Euryarc... 91 1e-17
UniRef50_Q8ZW51 Cluster: 50S ribosomal protein L4P; n=9; Archaea... 86 7e-16
UniRef50_Q2NFV7 Cluster: 50S ribosomal protein L4P; n=2; Euryarc... 85 2e-15
UniRef50_Q9HIR0 Cluster: 50S ribosomal protein L4P; n=4; Thermop... 84 2e-15
UniRef50_Q98S44 Cluster: 60s ribosomal protein L1; n=2; Cryptomo... 83 5e-15
UniRef50_UPI00005A24EF Cluster: PREDICTED: similar to ribosomal ... 82 8e-15
UniRef50_A7AUF0 Cluster: Ribosomal protein RPL4A; n=1; Babesia b... 79 1e-13
UniRef50_Q9UXA6 Cluster: 50S ribosomal protein L4P; n=3; Archaea... 77 2e-13
UniRef50_Q673S8 Cluster: Ribosomal protein L4; n=3; cellular org... 70 5e-11
UniRef50_P60847 Cluster: 50S ribosomal protein L4P; n=1; Nanoarc... 69 6e-11
UniRef50_Q4UES5 Cluster: 60S ribosomal subunit protein L4/L1, pu... 69 8e-11
UniRef50_Q9YFM1 Cluster: 50S ribosomal protein L4P; n=8; Archaea... 62 1e-08
UniRef50_P12735 Cluster: 50S ribosomal protein L4P; n=1; Haloarc... 58 2e-07
UniRef50_A0RVX5 Cluster: Ribosomal protein L4; n=2; Thermoprotei... 50 3e-05
UniRef50_UPI0000DA3D75 Cluster: PREDICTED: similar to ribosomal ... 41 0.019
UniRef50_Q4FXU7 Cluster: Putative uncharacterized protein; n=2; ... 41 0.019
UniRef50_A2DPP4 Cluster: Phosphatidylinositol 3-and 4-kinase fam... 35 1.7
UniRef50_UPI0000EBC685 Cluster: PREDICTED: similar to Hrnr prote... 34 2.9
UniRef50_P14653 Cluster: Homeobox protein Hox-B1; n=29; Euteleos... 33 3.8
UniRef50_A7H921 Cluster: Ku family containing protein; n=1; Anae... 33 5.0
UniRef50_UPI000155CE06 Cluster: PREDICTED: similar to MAPA prote... 32 8.8
>UniRef50_Q5MGK5 Cluster: Ribosomal protein 23; n=2;
Endopterygota|Rep: Ribosomal protein 23 - Lonomia
obliqua (Moth)
Length = 274
Score = 265 bits (649), Expect = 6e-70
Identities = 120/155 (77%), Positives = 138/155 (89%)
Frame = +2
Query: 2 EKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQR 181
+ + E+PLVV+DK+QEINKTKQAVIFLRR+KAWSD+LKVYKSQRLRAGKGKMRNRRR+ R
Sbjct: 10 DNVSEIPLVVSDKIQEINKTKQAVIFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRLHR 69
Query: 182 KGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLF 361
KGPLII+NKDQGLTR+FRNIPGV+ APGGH+GRF+IWTQSAF RLD +F
Sbjct: 70 KGPLIIYNKDQGLTRSFRNIPGVDMVNVNKLNLLHLAPGGHVGRFMIWTQSAFERLDAIF 129
Query: 362 GSWKTPSKQKKNFNLPQPKMANTDLTRILKSDEIR 466
GSWKTPSK+KKNFNLPQPKMANTDL+R+LKS+EIR
Sbjct: 130 GSWKTPSKEKKNFNLPQPKMANTDLSRLLKSEEIR 164
Score = 78.2 bits (184), Expect = 1e-13
Identities = 40/60 (66%), Positives = 48/60 (80%), Gaps = 3/60 (5%)
Frame = +3
Query: 423 PTLTSHVFSSLMRSG---KVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAIL 593
P + + S L++S +VLRAP KRV+RATRKLNPLTN KAMLKLNPYAAVLK+KA+L
Sbjct: 147 PKMANTDLSRLLKSEEIRRVLRAPIKRVVRATRKLNPLTNTKAMLKLNPYAAVLKKKAVL 206
>UniRef50_P09180 Cluster: 60S ribosomal protein L4; n=96;
Eukaryota|Rep: 60S ribosomal protein L4 - Drosophila
melanogaster (Fruit fly)
Length = 401
Score = 228 bits (558), Expect = 7e-59
Identities = 102/154 (66%), Positives = 127/154 (82%)
Frame = +2
Query: 8 IPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKG 187
+ E PLVV+D+VQ++ KTKQAVIFLRRLK W+DI KVYKSQR RAG+G MR+RRRI R+G
Sbjct: 150 VSEFPLVVSDEVQKVQKTKQAVIFLRRLKIWADIQKVYKSQRFRAGRGTMRDRRRIARRG 209
Query: 188 PLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGS 367
PL++++KD+GL +AFRNIPG+E APGGH+GRFVIWT+SAF RL+ LFG+
Sbjct: 210 PLVVYDKDEGLRKAFRNIPGIETINVDKLNLLKLAPGGHVGRFVIWTESAFARLNDLFGT 269
Query: 368 WKTPSKQKKNFNLPQPKMANTDLTRILKSDEIRE 469
WK PS KK +NLPQPKMANTDL+R+LKS+EIR+
Sbjct: 270 WKKPSTLKKGYNLPQPKMANTDLSRLLKSEEIRK 303
Score = 62.5 bits (145), Expect = 7e-09
Identities = 32/60 (53%), Positives = 42/60 (70%), Gaps = 3/60 (5%)
Frame = +3
Query: 423 PTLTSHVFSSLMRSG---KVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAIL 593
P + + S L++S KVLR P KRV R+ R+LNPLTN + ++KLNPYA VLKR+A L
Sbjct: 285 PKMANTDLSRLLKSEEIRKVLRDPRKRVFRSVRRLNPLTNVRQLIKLNPYAEVLKRRAAL 344
>UniRef50_P36578 Cluster: 60S ribosomal protein L4; n=70;
Eukaryota|Rep: 60S ribosomal protein L4 - Homo sapiens
(Human)
Length = 427
Score = 211 bits (515), Expect = 1e-53
Identities = 95/155 (61%), Positives = 120/155 (77%)
Frame = +2
Query: 2 EKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQR 181
E++PELPLVV DKV+ KTK+AV+ L++LKAW+DI KVY SQR+RAGKGKMRNRRRIQR
Sbjct: 145 EEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQR 204
Query: 182 KGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLF 361
+GP II+N+D G+ +AFRNIPG+ APGGH+GRF IWT+SAF +LD L+
Sbjct: 205 RGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELY 264
Query: 362 GSWKTPSKQKKNFNLPQPKMANTDLTRILKSDEIR 466
G+W+ + K N+NLP KM NTDL+RILKS EI+
Sbjct: 265 GTWRKAASLKSNYNLPMHKMINTDLSRILKSPEIQ 299
Score = 49.2 bits (112), Expect = 7e-05
Identities = 22/42 (52%), Positives = 28/42 (66%)
Frame = +3
Query: 468 KVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAIL 593
+ LRAP K++ R K NPL N + MLKLNPYA ++R IL
Sbjct: 300 RALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTIL 341
>UniRef50_Q00UB0 Cluster: Ribosomal protein RPL1/RPL2/RL4L4; n=1;
Ostreococcus tauri|Rep: Ribosomal protein
RPL1/RPL2/RL4L4 - Ostreococcus tauri
Length = 404
Score = 175 bits (426), Expect = 6e-43
Identities = 82/155 (52%), Positives = 111/155 (71%)
Frame = +2
Query: 2 EKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQR 181
E +PE+PLVV D I KT +AV L++L A++DI KV S+ +R+GKGKMRNRR +QR
Sbjct: 148 EGVPEVPLVVDDSASSIKKTAKAVELLKQLGAYADIEKVKASRNVRSGKGKMRNRRYVQR 207
Query: 182 KGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLF 361
+GPL+++++D G+TRAFRNIPGVE APGGH+GRF+IWT+SAF +LD +F
Sbjct: 208 RGPLVVYSEDNGVTRAFRNIPGVELCSVDRLGLLTLAPGGHVGRFIIWTKSAFEKLDSIF 267
Query: 362 GSWKTPSKQKKNFNLPQPKMANTDLTRILKSDEIR 466
G+ + S KK + P MA TDLTR++ SDEI+
Sbjct: 268 GTSTSKSASKKGWKPPTNIMAQTDLTRLINSDEIQ 302
Score = 34.3 bits (75), Expect = 2.2
Identities = 20/37 (54%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +3
Query: 474 LRAPNKRVIRATRKL--NPLTNNKAMLKLNPYAAVLK 578
L AP IRA L NPL N AM KLNPYA V +
Sbjct: 305 LNAPKLGAIRAHAPLKRNPLKNKSAMDKLNPYAKVAR 341
>UniRef50_Q1KYM6 Cluster: RPL4; n=1; Streblomastix strix|Rep: RPL4 -
Streblomastix strix
Length = 492
Score = 150 bits (363), Expect = 3e-35
Identities = 72/155 (46%), Positives = 102/155 (65%)
Frame = +2
Query: 2 EKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQR 181
+ +PELPLVV+D V++I KTK+AV L LKA D+ +S+R+R G GK RNRR QR
Sbjct: 145 DNVPELPLVVSDDVEQIKKTKEAVKVLAALKASDDVKHSAESKRIRVGSGKARNRRYTQR 204
Query: 182 KGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLF 361
+G LI+ ++++GL AFRNI GV+ APGGHLGRF+IWT+ A+ +LD L+
Sbjct: 205 RGVLIVHDQNEGLANAFRNISGVDISNVXRLNIRDLAPGGHLGRFIIWTEGAYKKLDKLY 264
Query: 362 GSWKTPSKQKKNFNLPQPKMANTDLTRILKSDEIR 466
G+ + K + P P + NTDL+RI+ S ++
Sbjct: 265 GTRFRTALLKNEYKHPTPSVTNTDLSRIIHSPTVQ 299
>UniRef50_Q0U8Q3 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 349
Score = 149 bits (360), Expect = 6e-35
Identities = 75/160 (46%), Positives = 101/160 (63%), Gaps = 6/160 (3%)
Frame = +2
Query: 8 IPELPLVVADKV---QEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQ 178
+PE+PLV++ I KT AV L+ + A +D K S++LRAGKGK+R RR Q
Sbjct: 123 VPEVPLVISSTAFADAAIRKTSAAVALLKAVGAGADCEKAKNSRKLRAGKGKLRGRRHKQ 182
Query: 179 RKGPLIIFNKDQG---LTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRL 349
R+GPL+I+N D+ L +AFRNIPGVE APGGHLGRF++WT SAFG L
Sbjct: 183 RRGPLVIYNPDEDGKELVKAFRNIPGVETSSVYSMNLLQLAPGGHLGRFIVWTSSAFGAL 242
Query: 350 DPLFGSWKTPSKQKKNFNLPQPKMANTDLTRILKSDEIRE 469
D ++GS PS KK+F LP M DL++I+ S +I++
Sbjct: 243 DTIYGSTTEPSALKKDFLLPSTMMKQPDLSKIINSSDIQK 282
>UniRef50_Q3SEA6 Cluster: Ribosomal protein L4, putative; n=2;
Oligohymenophorea|Rep: Ribosomal protein L4, putative -
Paramecium tetraurelia
Length = 406
Score = 147 bits (357), Expect = 1e-34
Identities = 70/156 (44%), Positives = 102/156 (65%), Gaps = 1/156 (0%)
Frame = +2
Query: 5 KIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRK 184
++P++PLVV DK++ KT A+ FL+R A+ D+ KV ++ +RAG K R ++ RK
Sbjct: 147 QVPQIPLVVEDKIESYEKTTDALNFLKRFGAFEDVQKVVSTKVVRAGISKQRGKKYRVRK 206
Query: 185 GPLII-FNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLF 361
GPL++ FN++ L +AFRN+PGVE APGG LGRFVIWTQSAF LD LF
Sbjct: 207 GPLVVYFNENAKLLKAFRNVPGVEVVNVTRLNLLQLAPGGQLGRFVIWTQSAFAHLDKLF 266
Query: 362 GSWKTPSKQKKNFNLPQPKMANTDLTRILKSDEIRE 469
G+++ S K + L +P + N DL RI+ S++++E
Sbjct: 267 GTYRYASVLKDGYQLLRPLLTNPDLARIINSNQVQE 302
Score = 37.1 bits (82), Expect = 0.31
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +3
Query: 435 SHVFSSLMRSGKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAI 590
+ + +S KV A +V+ +K NPL N KAM +LNPYA + A+
Sbjct: 292 ARIINSNQVQEKVQPAKTTKVLHDVQKKNPLKNTKAMDRLNPYAKKQRAAAV 343
>UniRef50_Q95YH2 Cluster: Ribosomal protein L4; n=1; Paramecium
caudatum|Rep: Ribosomal protein L4 - Paramecium caudatum
Length = 252
Score = 141 bits (342), Expect = 1e-32
Identities = 69/156 (44%), Positives = 99/156 (63%), Gaps = 1/156 (0%)
Frame = +2
Query: 29 VADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLII-FN 205
V DK++ KTK A+ FL+R A+ D+ KV ++ +RAG K R ++ RKGPL++ FN
Sbjct: 1 VEDKIESYEKTKDALNFLKRFGAFEDVQKVVSTKTIRAGVSKSRGKKYRVRKGPLVVYFN 60
Query: 206 KDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSK 385
++ L +AFRN+PGVE APGG LGRFVIWTQSAF LD LFG+++ S
Sbjct: 61 ENAKLLKAFRNVPGVEVVNVTRLNLLQLAPGGQLGRFVIWTQSAFANLDKLFGTYRYSSI 120
Query: 386 QKKNFNLPQPKMANTDLTRILKSDEIREGPPCSQQT 493
K + L +P + N DL RI+ S++++E ++QT
Sbjct: 121 LKDGYQLLRPLLTNPDLARIINSNQVQEKVQAAKQT 156
Score = 35.1 bits (77), Expect = 1.3
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +3
Query: 435 SHVFSSLMRSGKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYA 566
+ + +S KV A V+ +K NPL N+KA+ +LNPYA
Sbjct: 138 ARIINSNQVQEKVQAAKQTTVLHEVQKKNPLKNSKALDRLNPYA 181
>UniRef50_UPI0000499FAF Cluster: 60S ribosomal protein L4; n=5;
Entamoeba histolytica HM-1:IMSS|Rep: 60S ribosomal
protein L4 - Entamoeba histolytica HM-1:IMSS
Length = 431
Score = 141 bits (341), Expect = 1e-32
Identities = 68/153 (44%), Positives = 102/153 (66%), Gaps = 2/153 (1%)
Frame = +2
Query: 8 IPELPLVVADK-VQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRK 184
+P++PLVV K + I KTKQAV L+++ A+SD+LKV S+ +RAG+GKMR R+ +RK
Sbjct: 147 VPQIPLVVNSKSISVIKKTKQAVYLLKKINAYSDVLKVIASKTVRAGQGKMRGRKIKERK 206
Query: 185 GPLIIF-NKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLF 361
GPL+++ N D +AFRNIPGV+ APG H+GRF+IWT+SAF +L+ +F
Sbjct: 207 GPLVVYGNDDLQAVKAFRNIPGVDTCRVENLSVLNLAPGCHIGRFIIWTESAFKKLNTIF 266
Query: 362 GSWKTPSKQKKNFNLPQPKMANTDLTRILKSDE 460
G+ K ++ K F + +MA D+ R++ + E
Sbjct: 267 GTQKKMAQGKSGFRIAHAQMAVPDMKRVVVAAE 299
Score = 33.5 bits (73), Expect = 3.8
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = +3
Query: 468 KVLRAPNKRVI-RATRKLNPLTNNKAMLKLNPYAAVLKRK 584
K+LRA K V+ + ++ NPL N AM+KLNPYA + K
Sbjct: 302 KLLRA--KIVLPKVPKRANPLKNWAAMVKLNPYAKIASHK 339
>UniRef50_A3FPV6 Cluster: 60S ribosomal protein-like, putative; n=4;
Cryptosporidium|Rep: 60S ribosomal protein-like,
putative - Cryptosporidium parvum Iowa II
Length = 394
Score = 134 bits (324), Expect = 1e-30
Identities = 65/155 (41%), Positives = 95/155 (61%), Gaps = 2/155 (1%)
Frame = +2
Query: 8 IPELPLVVADKVQEINKTKQAVIFLRRL-KAWSDILK-VYKSQRLRAGKGKMRNRRRIQR 181
+PELPLV+++++Q INKT AV F + K + +K + S +R GKGKMRNRRR+
Sbjct: 148 VPELPLVISNEIQNINKTSTAVEFFKNFGKGLEEEMKRIESSIAIRCGKGKMRNRRRVCA 207
Query: 182 KGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLF 361
GPL+++ +D G+ +A RNI GV+ APGG GR I+T+ A RL ++
Sbjct: 208 VGPLVVYAEDNGIVKAMRNIKGVDTCSVERLNLLRLAPGGTFGRLTIFTKGAIKRLQEIY 267
Query: 362 GSWKTPSKQKKNFNLPQPKMANTDLTRILKSDEIR 466
GS+ S K + LP+P M N D+TRI+ S E++
Sbjct: 268 GSYTHGSSSKVGYTLPRPAMTNADITRIINSTEVQ 302
>UniRef50_A7E7X3 Cluster: 60S ribosomal protein L4; n=2;
Sclerotiniaceae|Rep: 60S ribosomal protein L4 -
Sclerotinia sclerotiorum 1980
Length = 373
Score = 132 bits (318), Expect = 8e-30
Identities = 68/160 (42%), Positives = 100/160 (62%), Gaps = 6/160 (3%)
Frame = +2
Query: 5 KIPELPLVVADKVQE---INKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRI 175
++ E+PLV+ +V E I +T A L+ + A D+ KV S++LRAGKGK+R RR
Sbjct: 145 EVAEVPLVINSEVFEGAKIARTAAAAGLLKTVGALKDVEKVKDSRKLRAGKGKLRGRRHR 204
Query: 176 QRKGPLIIFN---KDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGR 346
QR+GPL++++ + L RAFRN+PGVE APGGHLGRF+IW+ SAF
Sbjct: 205 QRRGPLVVYDGATDGKELVRAFRNLPGVETCDVYSLNLLQLAPGGHLGRFIIWSSSAFKA 264
Query: 347 LDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRILKSDEIR 466
LD ++G+ PS KK+F LP ++ D+ R++ S E++
Sbjct: 265 LDNIYGTTTAPSALKKDFLLPSNVVSQADIGRLINSSELQ 304
Score = 33.1 bits (72), Expect = 5.0
Identities = 20/54 (37%), Positives = 30/54 (55%)
Frame = +3
Query: 429 LTSHVFSSLMRSGKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAI 590
+ S S++R+ K A KR +K NPL N + +L+LNPYAA ++ I
Sbjct: 298 INSSELQSVIRAAKG-SALTKRA--GVQKKNPLLNKQVLLRLNPYAAGYSKEKI 348
>UniRef50_Q4XUM2 Cluster: 60S ribosomal subunit protein L4/L1,
putative; n=5; Plasmodium|Rep: 60S ribosomal subunit
protein L4/L1, putative - Plasmodium chabaudi
Length = 411
Score = 131 bits (317), Expect = 1e-29
Identities = 65/169 (38%), Positives = 103/169 (60%), Gaps = 5/169 (2%)
Frame = +2
Query: 8 IPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKG 187
+ E+PLV ++ ++ + KTK A+ FL L ++ ++ KS +LRA GKMRNR+ G
Sbjct: 147 LKEVPLVASNDIESMQKTKDALKFLISLGLRDEVNRLIKSXKLRARXGKMRNRKYKISNG 206
Query: 188 PLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGS 367
PLII++ D G+ +AFRNIPGV+ APGG +GR IW++ AF +LD ++G
Sbjct: 207 PLIIYSXDSGIKKAFRNIPGVDLCNVTKLNLLKLAPGGSIGRLCIWSEDAFKKLDVIYGK 266
Query: 368 WKTPSKQKKNFNLPQPKMANTDLTRILKSDEIR-----EGPPCSQQTRD 499
KKN+ LP+P + N D+ RI+ SD+++ + PC ++T++
Sbjct: 267 TFQKYVTKKNYILPKPIVNNADIYRIINSDQVQASLLDKKSPCKKRTQN 315
>UniRef50_A7R5H8 Cluster: Chromosome undetermined scaffold_974,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_974, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 386
Score = 128 bits (309), Expect = 1e-28
Identities = 60/132 (45%), Positives = 84/132 (63%), Gaps = 1/132 (0%)
Frame = +2
Query: 2 EKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQR 181
E +PELPLV+ D + + KT A+ L++ A+ D K S + GKGKMRNRR I R
Sbjct: 8 ESVPELPLVIGDSAESVEKTSAAIDILKQFDAYLDTEKAKDSHAIHPGKGKMRNRRYISR 67
Query: 182 KGPLIIFNKDQG-LTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPL 358
KGPLI++ + L +AFRNIPGVE APGGHLGRFVIWT+S+F +LD +
Sbjct: 68 KGPLIVYGMEGAKLVKAFRNIPGVEVANVDRLNLLKLAPGGHLGRFVIWTKSSFEKLDSI 127
Query: 359 FGSWKTPSKQKK 394
+ S++ ++++
Sbjct: 128 YRSFEKKLRRRR 139
>UniRef50_A2E1Z6 Cluster: Ribosomal protein, putative; n=3;
Trichomonas vaginalis G3|Rep: Ribosomal protein,
putative - Trichomonas vaginalis G3
Length = 370
Score = 122 bits (295), Expect = 5e-27
Identities = 59/154 (38%), Positives = 91/154 (59%)
Frame = +2
Query: 5 KIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRK 184
++ E+P+VV D VQEI +T+ AV L+++ + D+ +V R+ KGK R +K
Sbjct: 143 EVKEVPIVVVDAVQEIKRTRDAVELLKKVGVYGDVQRVLDGSVHRSSKGKFRRAAYKTKK 202
Query: 185 GPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFG 364
GPL+I+N+D+G+ +AFRNIPGVE AP +GR +WT+SAF LD ++
Sbjct: 203 GPLVIYNEDKGIVKAFRNIPGVETISVKALALAKLAPAAQVGRLTVWTESAFKALDGIYE 262
Query: 365 SWKTPSKQKKNFNLPQPKMANTDLTRILKSDEIR 466
S KK F+LP+ M N D+ ++ SD ++
Sbjct: 263 S-------KKRFSLPRSIMTNADIEAVITSDAVQ 289
>UniRef50_Q7R0P2 Cluster: GLP_79_45017_44067; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_79_45017_44067 - Giardia lamblia
ATCC 50803
Length = 316
Score = 121 bits (292), Expect = 1e-26
Identities = 60/154 (38%), Positives = 93/154 (60%)
Frame = +2
Query: 8 IPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKG 187
+P +PLVV + KTK A+ ++ + D+ + S+ +RAG+GKMRNRR I RKG
Sbjct: 137 VPSIPLVV--DTDNVTKTKDALAIIKAVGVLRDVERCKDSRHIRAGRGKMRNRRYITRKG 194
Query: 188 PLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGS 367
PL+I+N + + R FRN+PGV+ APG H GR ++WT+SAF LD ++ +
Sbjct: 195 PLVIYNTED-VARGFRNLPGVDLCHVSSIRLLELAPGSHPGRLILWTKSAFASLDDVYAA 253
Query: 368 WKTPSKQKKNFNLPQPKMANTDLTRILKSDEIRE 469
K+N+ LP+ + TD+ RIL+SD +++
Sbjct: 254 -------KQNYTLPRSCITQTDIERILQSDAVQK 280
>UniRef50_UPI00005A2ACC Cluster: PREDICTED: similar to ribosomal
protein L4; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to ribosomal protein L4 - Canis familiaris
Length = 248
Score = 90.2 bits (214), Expect(2) = 2e-26
Identities = 40/64 (62%), Positives = 52/64 (81%)
Frame = +2
Query: 38 KVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQG 217
KV+ KTK+ V+ L++LKAW+DI KVY SQR+RAGKGKMRNRR IQR+G II+N+D G
Sbjct: 98 KVEGYKKTKEEVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRPIQRRGSCIIYNEDNG 157
Query: 218 LTRA 229
+ +A
Sbjct: 158 IIKA 161
Score = 51.6 bits (118), Expect(2) = 2e-26
Identities = 23/44 (52%), Positives = 30/44 (68%)
Frame = +2
Query: 335 AFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRILKSDEIR 466
AF +LD L+G+W + K N+NLP KM NTDL+RILK I+
Sbjct: 173 AFCKLDDLYGTWPKAASLKSNYNLPMHKMLNTDLSRILKRPGIQ 216
Score = 36.7 bits (81), Expect = 0.41
Identities = 18/32 (56%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = +3
Query: 468 KVLRAPNKRVIRAT-RKLNPLTNNKAMLKLNP 560
+ LRAP KR+ R +K NPL N + MLKLNP
Sbjct: 217 RALRAPRKRIHRRVLKKKNPLKNLRLMLKLNP 248
>UniRef50_Q8SRC2 Cluster: 60S RIBOSOMAL PROTEIN L4; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L4 -
Encephalitozoon cuniculi
Length = 335
Score = 116 bits (280), Expect = 3e-25
Identities = 60/150 (40%), Positives = 86/150 (57%)
Frame = +2
Query: 17 LPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLI 196
LP++V+D + + KTK AV LR L ++ +V KS+ +R GKGKMRNRR QRKG LI
Sbjct: 147 LPIIVSDDIAKARKTKDAVEILRNLNMTEELKRVEKSRGVRCGKGKMRNRRYTQRKGILI 206
Query: 197 IFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKT 376
+ + + FRNI GV+ APGG GR +IWT+SAF +LD +FG +
Sbjct: 207 VHGESSEML-GFRNIRGVDQMSIDSLDLLELAPGGVAGRLIIWTESAFEKLDKIFGGVER 265
Query: 377 PSKQKKNFNLPQPKMANTDLTRILKSDEIR 466
++ F LP + + DL + SD ++
Sbjct: 266 EAELTPGFKLPNRIVTHDDLEELFYSDAVQ 295
>UniRef50_Q4FXU6 Cluster: Ribosomal protein L1a, putative; n=1;
Leishmania major strain Friedlin|Rep: Ribosomal protein
L1a, putative - Leishmania major strain Friedlin
Length = 432
Score = 93.5 bits (222), Expect = 3e-18
Identities = 44/98 (44%), Positives = 65/98 (66%)
Frame = +2
Query: 8 IPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKG 187
+PE+PLVV D +Q KTK+A+ FL+ + A D+ +V S+ +RAG+GKMRNRR + R+G
Sbjct: 146 VPEVPLVVEDSIQGYEKTKEAMAFLKAIAAIDDVNRVNDSREIRAGRGKMRNRRYVARRG 205
Query: 188 PLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGG 301
P+++ ++G TRAFRNI G++ APGG
Sbjct: 206 PMLVMPNNKG-TRAFRNIFGLDLANVSALTLLHLAPGG 242
>UniRef50_Q8TY91 Cluster: 50S ribosomal protein L4P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Methanopyrus kandleri
Length = 260
Score = 91.9 bits (218), Expect = 1e-17
Identities = 41/121 (33%), Positives = 69/121 (57%)
Frame = +2
Query: 2 EKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQR 181
+ +P LP+VV D+++ +NK ++ F + + W+D+ + ++R+RAGKGK R RR ++
Sbjct: 139 DDVPHLPVVVVDELKSLNKAREVREFFKSVGLWADVERAKSNRRIRAGKGKRRGRRYVKP 198
Query: 182 KGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLF 361
K LI+ ++D+G+ RN PGV+ APG H GR ++T A L+
Sbjct: 199 KSVLIVVDEDEGIKLGARNHPGVDVVEAMHLGVEHLAPGAHPGRLTVFTPGALEVLEERL 258
Query: 362 G 364
G
Sbjct: 259 G 259
>UniRef50_O28355 Cluster: 50S ribosomal protein L4P; n=9;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Archaeoglobus fulgidus
Length = 252
Score = 91.5 bits (217), Expect = 1e-17
Identities = 39/108 (36%), Positives = 66/108 (61%)
Frame = +2
Query: 14 ELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPL 193
ELP VV+++++ + +TK R + ++D+ + + +R RAG+GKMR RR +++K L
Sbjct: 136 ELPKVVSNELESVKRTKDVAEVFRAIGVYADVERAKERKRYRAGRGKMRGRRYVKKKSVL 195
Query: 194 IIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSA 337
++ KD G+ +A +N+PGV+ APG H GR +WT+SA
Sbjct: 196 LVVGKDDGVVKAAKNLPGVDAVVVKDLNVELLAPGCHPGRLTVWTKSA 243
>UniRef50_Q8ZW51 Cluster: 50S ribosomal protein L4P; n=9;
Archaea|Rep: 50S ribosomal protein L4P - Pyrobaculum
aerophilum
Length = 283
Score = 85.8 bits (203), Expect = 7e-16
Identities = 45/121 (37%), Positives = 64/121 (52%), Gaps = 1/121 (0%)
Frame = +2
Query: 2 EKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQR 181
EK+P LP+VV ++IN+ K+A L W D+ + + ++RAGKGKMR RR +
Sbjct: 162 EKVPSLPVVVVGDAEKINRAKEAKKLFEALGLWPDVERAAEGVKIRAGKGKMRGRRYKEP 221
Query: 182 KGPLIIFNK-DQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPL 358
K L++ + + L A RN PGV+ APGG GR +WT A +L L
Sbjct: 222 KSVLVVVSDLNAPLIAAVRNFPGVDVVAVNNLNILVLAPGGVPGRLTLWTAPAVEKLRGL 281
Query: 359 F 361
F
Sbjct: 282 F 282
>UniRef50_Q2NFV7 Cluster: 50S ribosomal protein L4P; n=2;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 259
Score = 84.6 bits (200), Expect = 2e-15
Identities = 38/119 (31%), Positives = 67/119 (56%)
Frame = +2
Query: 5 KIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRK 184
++ ++P V+ D+++ + TK+ + L DI++ K +++++GKGK+R R+ K
Sbjct: 136 ELEQIPFVIDDEIETVKTTKETREIFKDLGIMDDIVRAKKGRKIKSGKGKLRGRKYRTPK 195
Query: 185 GPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLF 361
GPL++ D+G++ RN GV+ APG H GR I+T+SA +L LF
Sbjct: 196 GPLVVVGNDRGISLGARNHAGVDVVEVNNINAELLAPGTHAGRLTIYTKSAIEKLGDLF 254
>UniRef50_Q9HIR0 Cluster: 50S ribosomal protein L4P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L4P -
Thermoplasma acidophilum
Length = 255
Score = 84.2 bits (199), Expect = 2e-15
Identities = 45/112 (40%), Positives = 64/112 (57%)
Frame = +2
Query: 14 ELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPL 193
+LP+VV D V+ INKTK A+ L+ L + DI + + + +RAG+GKMR RR Q K L
Sbjct: 140 KLPIVVEDGVEGINKTKDAIALLKNLGVYEDIERSREGKHIRAGRGKMRGRRYKQPKSVL 199
Query: 194 IIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRL 349
I+ + +AFR++PGV+ APGG GR I+T+ A L
Sbjct: 200 IVARNSSAM-KAFRSLPGVDIASPNSLSIRKLAPGGVGGRLTIFTEGAIESL 250
>UniRef50_Q98S44 Cluster: 60s ribosomal protein L1; n=2;
Cryptomonadaceae|Rep: 60s ribosomal protein L1 -
Guillardia theta (Cryptomonas phi)
Length = 255
Score = 83.0 bits (196), Expect = 5e-15
Identities = 42/117 (35%), Positives = 67/117 (57%)
Frame = +2
Query: 8 IPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKG 187
IPE+P V+ D +++I KT+ + L L + I++ ++L++GKGKMRNRR + G
Sbjct: 142 IPEIPFVIEDSIEKIPKTRDLIKILTTLGI-NSIVRNKLKRKLKSGKGKMRNRRFKKPTG 200
Query: 188 PLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPL 358
PL++F + ++ RNI ++ APGGHLGR IW+ AF L+ +
Sbjct: 201 PLLVFKNN---LKSLRNIANIDCMKISALNLTKLAPGGHLGRLCIWSSKAFQMLNTI 254
>UniRef50_UPI00005A24EF Cluster: PREDICTED: similar to ribosomal
protein L4; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to ribosomal protein L4 - Canis familiaris
Length = 253
Score = 82.2 bits (194), Expect = 8e-15
Identities = 36/53 (67%), Positives = 46/53 (86%)
Frame = +2
Query: 5 KIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRN 163
++PELPLVV DKV+ KT++AV+ L++LKAW+DI KVY SQR+RAGKGKMRN
Sbjct: 9 EVPELPLVVEDKVEGYKKTEEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRN 61
Score = 56.4 bits (130), Expect = 5e-07
Identities = 25/44 (56%), Positives = 32/44 (72%)
Frame = +2
Query: 335 AFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRILKSDEIR 466
AF +LD L+G+W + K N+NLP KM NTDL+RILKS EI+
Sbjct: 95 AFCKLDDLYGTWHKAASLKSNYNLPMHKMLNTDLSRILKSPEIQ 138
Score = 46.0 bits (104), Expect = 7e-04
Identities = 21/42 (50%), Positives = 27/42 (64%)
Frame = +3
Query: 468 KVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAIL 593
+ L+AP K++ R K NPL N MLKLNPYA ++R IL
Sbjct: 139 RALQAPRKKIHRRVLKKNPLKNLGIMLKLNPYAKTMRRNTIL 180
>UniRef50_A7AUF0 Cluster: Ribosomal protein RPL4A; n=1; Babesia
bovis|Rep: Ribosomal protein RPL4A - Babesia bovis
Length = 360
Score = 78.6 bits (185), Expect = 1e-13
Identities = 57/161 (35%), Positives = 84/161 (52%), Gaps = 2/161 (1%)
Frame = +2
Query: 2 EKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQR 181
E + E+P+VV D +++INKTK AV L + +++ ++ K G+ R+ R+ +
Sbjct: 144 EALREVPMVVDDAIEQINKTKDAVKLLETIGLGAELKRIDKVT------GRARDGRKKRP 197
Query: 182 KGPLIIFNKD--QGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDP 355
GPLII +G RAFRNIPGVE AP G LGR +W++SAF LD
Sbjct: 198 VGPLIILRATAVEG-KRAFRNIPGVEVACVERLNLLKLAPAGALGRLCVWSKSAFEALDD 256
Query: 356 LFGSWKTPSKQKKNFNLPQPKMANTDLTRILKSDEIREGPP 478
P+K KN +L + +T + L++ REG P
Sbjct: 257 YIK--MMPTKLLKNADL-SALIESTPVQAALRAP--REGTP 292
>UniRef50_Q9UXA6 Cluster: 50S ribosomal protein L4P; n=3;
Archaea|Rep: 50S ribosomal protein L4P - Sulfolobus
solfataricus
Length = 267
Score = 77.4 bits (182), Expect = 2e-13
Identities = 40/112 (35%), Positives = 63/112 (56%), Gaps = 1/112 (0%)
Frame = +2
Query: 20 PLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLII 199
P+VV D + + T + FL+++ + D+ +V + R+RAGKGKMR R+ + GPLII
Sbjct: 147 PIVVTDDIVNLKTTSEVEEFLKKIGVYDDVERVKERIRIRAGKGKMRGRKYKEPIGPLII 206
Query: 200 -FNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLD 352
+ + + +A RN+ GV+ APG H GR I+T+S+ LD
Sbjct: 207 VHDSNSPIIKAARNLAGVDVVNAKDVSVIHLAPGAHPGRLTIYTESSIKILD 258
>UniRef50_Q673S8 Cluster: Ribosomal protein L4; n=3; cellular
organisms|Rep: Ribosomal protein L4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 304
Score = 69.7 bits (163), Expect = 5e-11
Identities = 34/98 (34%), Positives = 53/98 (54%)
Frame = +2
Query: 59 TKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRN 238
T++ V + L +D+ + + +RAGKG MR R+ K L++ ++ GL +A RN
Sbjct: 207 TRKFVAMMEGLGLGADLDRARTGRTIRAGKGTMRGRKYRTPKSILLVVSQTNGLAKAARN 266
Query: 239 IPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLD 352
IPGV+ APGG GR +WT++A G L+
Sbjct: 267 IPGVDIVVAKDLSAEDLAPGGDAGRLTVWTKAAIGALE 304
>UniRef50_P60847 Cluster: 50S ribosomal protein L4P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L4P -
Nanoarchaeum equitans
Length = 268
Score = 69.3 bits (162), Expect = 6e-11
Identities = 40/109 (36%), Positives = 62/109 (56%), Gaps = 1/109 (0%)
Frame = +2
Query: 26 VVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFN 205
+V D ++++ KTK+ L +L ++ +VY+ +R RAGKGK R R I+RKGPLI+ N
Sbjct: 154 IVVDGLEQLRKTKEIQQLLLKLGLEKELERVYEIKR-RAGKGKRRGRAYIERKGPLIVVN 212
Query: 206 K-DQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRL 349
++ L +A NIPG++ APG GR +I ++ A L
Sbjct: 213 DYNEQLFKAVDNIPGLDIEEVPNLNVELLAPGAKPGRLLIISKDALETL 261
>UniRef50_Q4UES5 Cluster: 60S ribosomal subunit protein L4/L1,
putative; n=2; Theileria|Rep: 60S ribosomal subunit
protein L4/L1, putative - Theileria annulata
Length = 426
Score = 68.9 bits (161), Expect = 8e-11
Identities = 45/119 (37%), Positives = 65/119 (54%), Gaps = 2/119 (1%)
Frame = +2
Query: 2 EKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQR 181
E +PELPLV+ D ++ + KT+ AV L + ++ +V ++R + KGK R
Sbjct: 144 ESVPELPLVLDDTMETLTKTRDAVELLNSMGLADELKRVSVTKRTKR-KGKKRP------ 196
Query: 182 KGPLIIFNKD--QGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLD 352
GPL++ +G RAFRNIPGV+ AP G LGR VI+++SAF LD
Sbjct: 197 VGPLVVMRSTAVEG-KRAFRNIPGVDVMSVEHMNLLKLAPAGTLGRLVIFSKSAFELLD 254
>UniRef50_Q9YFM1 Cluster: 50S ribosomal protein L4P; n=8;
Archaea|Rep: 50S ribosomal protein L4P - Aeropyrum
pernix
Length = 272
Score = 62.1 bits (144), Expect = 1e-08
Identities = 38/117 (32%), Positives = 56/117 (47%), Gaps = 2/117 (1%)
Frame = +2
Query: 17 LPLVVADKV-QEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPL 193
LP+V+ V +I+ ++A L + + D+L+ + +R AGKGKMR RR K L
Sbjct: 151 LPIVLDSSVLAKISTAREARSLLESVGVYEDVLRAKEGKRYNAGKGKMRGRRYKVPKSVL 210
Query: 194 IIFNKDQG-LTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLF 361
+ + L A + +PGV+ APGGH GR I+T A L F
Sbjct: 211 FVLEDPRSPLALAVKGMPGVDVVTPTLLSVLHLAPGGHPGRLTIYTTEALKLLSRRF 267
>UniRef50_P12735 Cluster: 50S ribosomal protein L4P; n=1; Haloarcula
marismortui|Rep: 50S ribosomal protein L4P - Haloarcula
marismortui (Halobacterium marismortui)
Length = 246
Score = 57.6 bits (133), Expect = 2e-07
Identities = 33/112 (29%), Positives = 60/112 (53%)
Frame = +2
Query: 14 ELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPL 193
E+P+VV+D +++ KT++ V L L +DI + ++ +++AG+G R R+ +R +
Sbjct: 135 EVPVVVSDDFEDLVKTQEVVSLLEALDVHADIDRADET-KIKAGQGSARGRK-YRRPASI 192
Query: 194 IIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRL 349
+ D+ T A RN+ G + APGG GR ++T+SA +
Sbjct: 193 LFVTSDEPSTAA-RNLAGADVATASEVNTEDLAPGGAPGRLTVFTESALAEV 243
>UniRef50_A0RVX5 Cluster: Ribosomal protein L4; n=2;
Thermoprotei|Rep: Ribosomal protein L4 - Cenarchaeum
symbiosum
Length = 271
Score = 50.4 bits (115), Expect = 3e-05
Identities = 28/112 (25%), Positives = 53/112 (47%)
Frame = +2
Query: 14 ELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPL 193
ELP+V++D ++ ++K + L L ++D+ ++ + ++ R GK +R R + K L
Sbjct: 144 ELPIVISDDIESVSKASEVRKILSALGLFADVNRL-EGRKPRTGKSALRGRPKKIGKSIL 202
Query: 194 IIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRL 349
+ D + RA PGV APG R +++++A L
Sbjct: 203 FVVGADGPVIRAVGGFPGVTARPARDLSVLDLAPGAEPARLTVYSKAAIESL 254
>UniRef50_UPI0000DA3D75 Cluster: PREDICTED: similar to ribosomal
protein L4; n=3; Rattus norvegicus|Rep: PREDICTED:
similar to ribosomal protein L4 - Rattus norvegicus
Length = 140
Score = 41.1 bits (92), Expect = 0.019
Identities = 20/42 (47%), Positives = 25/42 (59%)
Frame = +3
Query: 468 KVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAIL 593
+ L+AP K + K NPLTN + MLKLNP A + R IL
Sbjct: 20 RALQAPCKEIQHRVSKKNPLTNLRIMLKLNPDAKTMHRNTIL 61
>UniRef50_Q4FXU7 Cluster: Putative uncharacterized protein; n=2;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major strain Friedlin
Length = 534
Score = 41.1 bits (92), Expect = 0.019
Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 3/132 (2%)
Frame = +1
Query: 43 PGDQQDQTGCHLPEAPQGMV*YP*GVQVSASSCW*G*NAQPSSYPA*GTPHNLQQGSGSD 222
PG ++D+ G +PE + +++ CW +AQP P G P + G
Sbjct: 210 PGLREDEGGYGVPEGDRCDRRREPRERLARDPCWPRQDAQP---PLRGAPRS-DAGDAEQ 265
Query: 223 ---SRLPQHPRCGXXXXXXXXXXXXGSGRPSWTFRHLDSVRIRQA*PLIRVMEDTIKTKE 393
+R+PQH R G G+ P W R LD+V +R A + + ++ +E
Sbjct: 266 QGHARVPQHLRAGPGECERAEPAAPGARWPRWPLRDLDAVCVRAAGQDLWHVHGGVRCEE 325
Query: 394 ELQPAPTEDGQH 429
L A + +H
Sbjct: 326 GLHAAGADADEH 337
>UniRef50_A2DPP4 Cluster: Phosphatidylinositol 3-and 4-kinase family
protein; n=1; Trichomonas vaginalis G3|Rep:
Phosphatidylinositol 3-and 4-kinase family protein -
Trichomonas vaginalis G3
Length = 2286
Score = 34.7 bits (76), Expect = 1.7
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = -2
Query: 223 SQTLILVEDYEGSLTLDTTTVAHFTLTSTKTLRLVHLKDIRPCLEAPQE-DDSLFGLVDL 47
SQ LI+ +Y L ++ F TS+ + V LK + C Q+ + S++ ++DL
Sbjct: 1065 SQKLIIDSEYLRGKILPIAFLSCFLNTSSDQ-KEVFLKQLNDCFSLGQKINSSIYKIIDL 1123
Query: 46 LDFVGYN 26
L+ +GYN
Sbjct: 1124 LEMLGYN 1130
>UniRef50_UPI0000EBC685 Cluster: PREDICTED: similar to Hrnr protein;
n=1; Bos taurus|Rep: PREDICTED: similar to Hrnr protein
- Bos taurus
Length = 1606
Score = 33.9 bits (74), Expect = 2.9
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 318 SSGLSPHSAGLTPYSGHGRHHQNKRRTSTCPNRR 419
SSG H +GL+ S +G+H R++S+C +R
Sbjct: 566 SSGFGQHGSGLSQSSSYGQHGSTSRQSSSCGQQR 599
>UniRef50_P14653 Cluster: Homeobox protein Hox-B1; n=29;
Euteleostomi|Rep: Homeobox protein Hox-B1 - Homo sapiens
(Human)
Length = 301
Score = 33.5 bits (73), Expect = 3.8
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 1 GKDSRASPGCSRQSPGDQQDQTGCHLPEAPQGMV 102
G+ A PGC +++ GD DQ+ C PEA V
Sbjct: 266 GRVPPAPPGCPKEAAGDASDQSTCTSPEASPSSV 299
>UniRef50_A7H921 Cluster: Ku family containing protein; n=1;
Anaeromyxobacter sp. Fw109-5|Rep: Ku family containing
protein - Anaeromyxobacter sp. Fw109-5
Length = 299
Score = 33.1 bits (72), Expect = 5.0
Identities = 26/99 (26%), Positives = 45/99 (45%)
Frame = -2
Query: 337 CGLSPDDETSKMASRSQLQEVQLVNIQELHTGDVAEGASQTLILVEDYEGSLTLDTTTVA 158
C + P D+ +++ ++ EV V+ EL A+ + + L + E GSL
Sbjct: 150 CCVRPIDDALALSTMNRADEVLPVSALELPAR--AKPSERELAMAEQLVGSLAAAFEPER 207
Query: 157 HFTLTSTKTLRLVHLKDIRPCLEAPQEDDSLFGLVDLLD 41
+ L + L LV K +EAP+ + + G+V L D
Sbjct: 208 YPDLHRERVLELVRRKAEGETIEAPEPERAPAGVVSLAD 246
>UniRef50_UPI000155CE06 Cluster: PREDICTED: similar to MAPA protein;
n=1; Ornithorhynchus anatinus|Rep: PREDICTED: similar to
MAPA protein - Ornithorhynchus anatinus
Length = 712
Score = 32.3 bits (70), Expect = 8.8
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +1
Query: 13 RASPGCSRQSPGDQQDQTGCHLPEAPQGMV 102
+++ G SPGD++D+TG PEAP+G V
Sbjct: 615 KSTSGPRDGSPGDREDRTGDREPEAPRGDV 644
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 604,716,536
Number of Sequences: 1657284
Number of extensions: 12337358
Number of successful extensions: 34707
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 33289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34669
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41488046300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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