Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0958
         (593 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           24   0.84 
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    23   1.5  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.6  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    22   3.4  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    22   4.5  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   7.8  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    21   7.8  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   7.8  

>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 24.2 bits (50), Expect = 0.84
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = +3

Query: 411 NRRWPTLTSHVFSSLMRSGKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRK 584
           N+ +  +      S++ SG + + P K VI++ R L P     ++L  N      KRK
Sbjct: 16  NKMYNVIQHSPQQSIIVSGSITQ-PTKTVIQSKRPLAPAPERTSVLVTNNSDLRCKRK 72


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 434 LTRILKSDEIREGPPCSQQTR 496
           L+R+LKS E  +G  C  +TR
Sbjct: 123 LSRVLKSIEKHQGAVCHLETR 143


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 411  WGRLKFFFCFDGVFHDPNK 355
            WG+ + F C  G+  D NK
Sbjct: 1299 WGKYEVFNCAPGLHWDNNK 1317


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 333 PHSAGLTPYSGHGRHHQN 386
           P S G++PY+    HH +
Sbjct: 40  PLSLGMSPYASSQHHHHH 57


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 429 VLAIFGWGRLKFFFCFDGVFHDPN 358
           VL+ F     +F++C+D  F+  N
Sbjct: 240 VLSTFSICITQFYYCYDSGFNSDN 263


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -1

Query: 68  PVWSC*SPGLC 36
           PVW   +PG+C
Sbjct: 619 PVWCAQNPGMC 629


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 446 LKSDEIREGPPCSQQTRDPCYTQIEPT 526
           LKSDEI   P  + + +    T+ EPT
Sbjct: 386 LKSDEIPPEPVPTPEPQPTQTTESEPT 412


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +3

Query: 312 VSSSGLSPHSAGLTPYSGHGRHHQNKRRTSTCPNR 416
           +S SG +P+ +  +PY  +     +K   S C +R
Sbjct: 58  LSPSGNTPNKSSTSPYPPNHPLSGSKHLCSICGDR 92


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,648
Number of Sequences: 336
Number of extensions: 2831
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14935063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)