Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0958
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   192   3e-50
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   192   3e-50
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   8.3  
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc...    25   8.3  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   8.3  
SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyce...    25   8.3  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  192 bits (468), Expect = 3e-50
 Identities = 87/155 (56%), Positives = 117/155 (75%)
 Frame = +2

Query: 2   EKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQR 181
           E+IPE+PLVV D VQ   KTK+AV  L+ +KA+ D++KV  S++LRAGKGK+RNRR +QR
Sbjct: 145 EEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLRNRRHVQR 204

Query: 182 KGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLF 361
           +GPL++FN+D G+ +AFRNIPGVE            APGGHLGRFVIWT+SAFG LD +F
Sbjct: 205 RGPLVVFNEDTGIVKAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVF 264

Query: 362 GSWKTPSKQKKNFNLPQPKMANTDLTRILKSDEIR 466
           GS    ++ KKN+ LP+  ++N D+TR++ SDEI+
Sbjct: 265 GSTTEVAQLKKNYFLPENIISNADVTRLINSDEIQ 299



 Score = 29.5 bits (63), Expect = 0.39
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 471 VLRAPNKRVIRA-TRKLNPLTNNKAMLKLNPYAAVLK 578
           V  A   RV RA  +K NPL N   + +LNPYA   K
Sbjct: 302 VKAAGPSRVKRAHVQKKNPLKNKAVLSRLNPYAKAYK 338


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  192 bits (468), Expect = 3e-50
 Identities = 87/155 (56%), Positives = 117/155 (75%)
 Frame = +2

Query: 2   EKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQR 181
           E+IPE+PLVV D VQ   KTK+AV  L+ +KA+ D++KV  S++LRAGKGK+RNRR +QR
Sbjct: 145 EEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRNRRHVQR 204

Query: 182 KGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLF 361
           +GPL++FN+D G+ +AFRNIPGVE            APGGHLGRFVIWT+SAFG LD +F
Sbjct: 205 RGPLVVFNEDAGIVKAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVF 264

Query: 362 GSWKTPSKQKKNFNLPQPKMANTDLTRILKSDEIR 466
           GS    ++ KKN+ LP+  ++N D+TR++ SDEI+
Sbjct: 265 GSTTEAAQLKKNYFLPENIISNADVTRLINSDEIQ 299



 Score = 29.9 bits (64), Expect = 0.29
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 471 VLRAPNKRVIRA-TRKLNPLTNNKAMLKLNPYAAVLK 578
           V  A   RV RA  +K NPL N   + +LNPYA   K
Sbjct: 302 VKAAGPSRVKRAHVQKKNPLKNKAVLARLNPYAKAYK 338


>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 312 VSSSGLSPHSAGLTPYSGHGRHHQNK 389
           VS S    HS    P+S  GRH++ K
Sbjct: 120 VSRSSSIGHSGSTAPWSSVGRHNRKK 145


>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 430

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +3

Query: 366 HGRHHQNKRRTSTCPNRRW 422
           HG H       S CPN RW
Sbjct: 378 HGGHTNRISEFSWCPNERW 396


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 371 KTPSKQKKNFNLPQPKMANTDLTRILKSDEIREGPP 478
           KTPS +K+    P P + N D    L S+E  E  P
Sbjct: 586 KTPSPEKQKVLSPPPIITNFD-KETLASNEAHEAVP 620


>SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 297 EAILDVSSSGLSPHSAGLTPYSGHG 371
           E IL  S  G+SP   G+T    HG
Sbjct: 35  EQILKFSKKGMSPSQIGVTLRDSHG 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,395,624
Number of Sequences: 5004
Number of extensions: 47332
Number of successful extensions: 130
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)