BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0958 (593 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 192 3e-50 SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 192 3e-50 SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 25 8.3 SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 25 8.3 SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 8.3 SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyce... 25 8.3 >SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizosaccharomyces pombe|chr 2|||Manual Length = 363 Score = 192 bits (468), Expect = 3e-50 Identities = 87/155 (56%), Positives = 117/155 (75%) Frame = +2 Query: 2 EKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQR 181 E+IPE+PLVV D VQ KTK+AV L+ +KA+ D++KV S++LRAGKGK+RNRR +QR Sbjct: 145 EEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLRNRRHVQR 204 Query: 182 KGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLF 361 +GPL++FN+D G+ +AFRNIPGVE APGGHLGRFVIWT+SAFG LD +F Sbjct: 205 RGPLVVFNEDTGIVKAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVF 264 Query: 362 GSWKTPSKQKKNFNLPQPKMANTDLTRILKSDEIR 466 GS ++ KKN+ LP+ ++N D+TR++ SDEI+ Sbjct: 265 GSTTEVAQLKKNYFLPENIISNADVTRLINSDEIQ 299 Score = 29.5 bits (63), Expect = 0.39 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%) Frame = +3 Query: 471 VLRAPNKRVIRA-TRKLNPLTNNKAMLKLNPYAAVLK 578 V A RV RA +K NPL N + +LNPYA K Sbjct: 302 VKAAGPSRVKRAHVQKKNPLKNKAVLSRLNPYAKAYK 338 >SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizosaccharomyces pombe|chr 2|||Manual Length = 363 Score = 192 bits (468), Expect = 3e-50 Identities = 87/155 (56%), Positives = 117/155 (75%) Frame = +2 Query: 2 EKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQR 181 E+IPE+PLVV D VQ KTK+AV L+ +KA+ D++KV S++LRAGKGK+RNRR +QR Sbjct: 145 EEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRNRRHVQR 204 Query: 182 KGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLF 361 +GPL++FN+D G+ +AFRNIPGVE APGGHLGRFVIWT+SAFG LD +F Sbjct: 205 RGPLVVFNEDAGIVKAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVF 264 Query: 362 GSWKTPSKQKKNFNLPQPKMANTDLTRILKSDEIR 466 GS ++ KKN+ LP+ ++N D+TR++ SDEI+ Sbjct: 265 GSTTEAAQLKKNYFLPENIISNADVTRLINSDEIQ 299 Score = 29.9 bits (64), Expect = 0.29 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%) Frame = +3 Query: 471 VLRAPNKRVIRA-TRKLNPLTNNKAMLKLNPYAAVLK 578 V A RV RA +K NPL N + +LNPYA K Sbjct: 302 VKAAGPSRVKRAHVQKKNPLKNKAVLARLNPYAKAYK 338 >SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual Length = 497 Score = 25.0 bits (52), Expect = 8.3 Identities = 11/26 (42%), Positives = 14/26 (53%) Frame = +3 Query: 312 VSSSGLSPHSAGLTPYSGHGRHHQNK 389 VS S HS P+S GRH++ K Sbjct: 120 VSRSSSIGHSGSTAPWSSVGRHNRKK 145 >SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces pombe|chr 3|||Manual Length = 430 Score = 25.0 bits (52), Expect = 8.3 Identities = 9/19 (47%), Positives = 9/19 (47%) Frame = +3 Query: 366 HGRHHQNKRRTSTCPNRRW 422 HG H S CPN RW Sbjct: 378 HGGHTNRISEFSWCPNERW 396 >SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual Length = 1611 Score = 25.0 bits (52), Expect = 8.3 Identities = 14/36 (38%), Positives = 18/36 (50%) Frame = +2 Query: 371 KTPSKQKKNFNLPQPKMANTDLTRILKSDEIREGPP 478 KTPS +K+ P P + N D L S+E E P Sbjct: 586 KTPSPEKQKVLSPPPIITNFD-KETLASNEAHEAVP 620 >SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyces pombe|chr 1|||Manual Length = 151 Score = 25.0 bits (52), Expect = 8.3 Identities = 11/25 (44%), Positives = 13/25 (52%) Frame = +3 Query: 297 EAILDVSSSGLSPHSAGLTPYSGHG 371 E IL S G+SP G+T HG Sbjct: 35 EQILKFSKKGMSPSQIGVTLRDSHG 59 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,395,624 Number of Sequences: 5004 Number of extensions: 47332 Number of successful extensions: 130 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 125 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 130 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 258201856 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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