Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0958
(593 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 171 5e-43
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 170 6e-43
01_01_0612 + 4565422-4565481,4565597-4565671,4565760-4566332,456... 30 1.2
02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216 30 1.6
02_04_0073 - 19471254-19472681 30 1.6
11_01_0388 + 2933006-2934173,2934312-2934371,2934877-2935067 29 3.7
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510... 29 3.7
02_05_0410 + 28744716-28744841,28745361-28745965,28746151-287462... 29 3.7
08_02_1278 - 25838146-25839411 28 4.9
08_02_1476 - 27372288-27372310,27372508-27372586,27372818-273730... 28 6.5
03_03_0125 - 14630078-14630136,14630197-14631160 28 6.5
03_03_0122 - 14617879-14618871 28 6.5
01_06_0160 - 27095727-27096008,27096164-27096652,27096983-270971... 28 6.5
01_01_0328 - 2664412-2664535,2665388-2665465,2667784-2667895,266... 28 6.5
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 171 bits (415), Expect = 5e-43
Identities = 79/156 (50%), Positives = 110/156 (70%), Gaps = 1/156 (0%)
Frame = +2
Query: 2 EKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQR 181
E +PELPLV++D + I KT QA+ L+++ A++D K S +R GKGKMRNRR I R
Sbjct: 149 ETVPELPLVISDSAESIEKTSQAIKILKQVGAYADAEKAKDSVGIRPGKGKMRNRRYINR 208
Query: 182 KGPLIIFNKDQG-LTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPL 358
KGPLI++ + + +AFRN+PGV+ APGGHLGRFVIWT+SAF +L+ +
Sbjct: 209 KGPLIVYGTEGSKIVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTESAFKKLEEV 268
Query: 359 FGSWKTPSKQKKNFNLPQPKMANTDLTRILKSDEIR 466
+G+++ PS +KK F LP+PKMAN DL RI+ SDE++
Sbjct: 269 YGTFEAPSLKKKGFILPRPKMANADLGRIINSDEVQ 304
Score = 37.5 bits (83), Expect = 0.008
Identities = 18/41 (43%), Positives = 25/41 (60%)
Frame = +3
Query: 471 VLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAIL 593
V++ NK V R ++ NPL N A+LKLNPY ++ A L
Sbjct: 306 VVKPLNKEVKRREKRKNPLKNVAAVLKLNPYFGTARKMATL 346
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 170 bits (414), Expect = 6e-43
Identities = 78/156 (50%), Positives = 110/156 (70%), Gaps = 1/156 (0%)
Frame = +2
Query: 2 EKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQR 181
E +PE PLVV+D ++ I KT Q++ L+++ A++D K S +RAGKGKMRNRR I R
Sbjct: 148 EGVPEFPLVVSDSIESIEKTAQSIKVLKQIGAYADAEKTKDSVAIRAGKGKMRNRRYINR 207
Query: 182 KGPLIIFNKDQG-LTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPL 358
KGPLI++ + + +AFRN+PGV+ APGGHLGRFVIWT+ AF +LD +
Sbjct: 208 KGPLIVYGTEGSKVVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTECAFKKLDEV 267
Query: 359 FGSWKTPSKQKKNFNLPQPKMANTDLTRILKSDEIR 466
+G + TP+ +KK F LP+PKMAN DL+R++ SDE++
Sbjct: 268 YGGFDTPALKKKGFVLPRPKMANADLSRLINSDEVQ 303
Score = 33.9 bits (74), Expect = 0.098
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +3
Query: 423 PTLTSHVFSSLMRSGKV---LRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAIL 593
P + + S L+ S +V ++ NK V + NPL N A+LKLNPY ++ A L
Sbjct: 286 PKMANADLSRLINSDEVQSVVKPINKEVKLREARRNPLKNVAAVLKLNPYFGTARKMAAL 345
>01_01_0612 +
4565422-4565481,4565597-4565671,4565760-4566332,
4566438-4566551,4566676-4567377
Length = 507
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -2
Query: 355 GVKPAECGLSPDDETSKMASRSQLQEVQLVNIQELHTGDVA 233
G+ A G++ DD+ K ASR L + ++N+ +GD A
Sbjct: 147 GLSCARGGVASDDDDDKQASRRALPPMPVLNLSSDSSGDAA 187
>02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216
Length = 1030
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +2
Query: 290 APG--GHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANT 430
APG G GR+V+ SA LDP F SW S++ K F++ + A++
Sbjct: 670 APGVDGCSGRYVV-AASAGNALDPGFCSWDYYSREAKAFHIEEISHASS 717
>02_04_0073 - 19471254-19472681
Length = 475
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +3
Query: 330 SPHSAGLTPYSGHGRHHQNKRRTSTCPNRRWPTLTSHVFSSLMRS--GKVLRAPNK 491
+P G +P S HG HH++++ T N + L V ++R G L PN+
Sbjct: 20 APRPRGASPLSSHGHHHRSRKIHRTFNNVKITVLCGLVTILVLRGTIGLNLSLPNQ 75
>11_01_0388 + 2933006-2934173,2934312-2934371,2934877-2935067
Length = 472
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/46 (34%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Frame = -2
Query: 202 EDYEGSLTL--DTTTVAHFTLTSTKTLRLVHLKDIRPCLEAPQEDD 71
ED +GS+ + DTT++ + +L++ ++L LV +K ++P L E+D
Sbjct: 236 EDCKGSVIVSCDTTSMYYKSLSTLQSLLLVCVKKLQPKLVVTIEED 281
>03_02_0027 +
5100865-5100878,5102241-5102708,5102795-5103021,
5103670-5104577
Length = 538
Score = 28.7 bits (61), Expect = 3.7
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Frame = +3
Query: 276 TS*SWLREAILDVSSSGLSPHSAGLTPYSGHGRHHQNKRR----TSTCPNRRWPTLTSHV 443
+S S+LR LD+SSS +P S+ H HHQ + S+ P WP
Sbjct: 376 SSSSFLRCLGLDMSSSSSAPPSSSGQQQQHHHHHHQETMQVPLPASSLP--EWPPRLQPE 433
Query: 444 FSSLMRSGKVLRAP 485
S ++ SG L P
Sbjct: 434 PSPMLSSGLGLGLP 447
>02_05_0410 +
28744716-28744841,28745361-28745965,28746151-28746270,
28746597-28746737,28748626-28749370
Length = 578
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/67 (23%), Positives = 29/67 (43%)
Frame = +3
Query: 315 SSSGLSPHSAGLTPYSGHGRHHQNKRRTSTCPNRRWPTLTSHVFSSLMRSGKVLRAPNKR 494
SSSG S S + +SG+ HH K PN + T+ + ++ ++
Sbjct: 394 SSSGASSASKNNSSHSGYHHHHHQKPLVKAEPNDQSAAATTAATVPVKEEAAMVGTSSEA 453
Query: 495 VIRATRK 515
+ + T+K
Sbjct: 454 LAKTTQK 460
>08_02_1278 - 25838146-25839411
Length = 421
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -2
Query: 88 APQEDDSLFGLVDLLDFVGYNQGKLGNLF 2
A +E LF L+D+LD V +G+L LF
Sbjct: 89 AAREPQRLFRLLDMLDAVARERGRLDELF 117
>08_02_1476 -
27372288-27372310,27372508-27372586,27372818-27373085,
27373346-27373410,27373611-27373757
Length = 193
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -3
Query: 321 MTKRPRWPPGASFRRFSLLTFRSSTPGMLRK 229
M RP WP AS R S+ R PG R+
Sbjct: 1 MAARPSWPSTASCRSRSVAYLRQQPPGHRRR 31
>03_03_0125 - 14630078-14630136,14630197-14631160
Length = 340
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +2
Query: 308 GRFVIWTQSAFGRL-DPLFGSWK 373
G FV+W AFG L L G+WK
Sbjct: 127 GGFVVWADRAFGPLAGSLLGTWK 149
>03_03_0122 - 14617879-14618871
Length = 330
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +2
Query: 308 GRFVIWTQSAFGRL-DPLFGSWK 373
G FV+W AFG L L G+WK
Sbjct: 124 GGFVVWADRAFGPLAGSLLGTWK 146
>01_06_0160 -
27095727-27096008,27096164-27096652,27096983-27097132,
27097656-27097920,27097995-27098274,27100311-27100388,
27100597-27101240,27101334-27101412,27101489-27101612,
27101782-27101882,27102870-27103068
Length = 896
Score = 27.9 bits (59), Expect = 6.5
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -2
Query: 340 ECGLSPDDETSKMASRSQLQEVQ 272
+CG+ PD+ S++ S+ QEV+
Sbjct: 51 DCGMDPDEAVSRLLSQDTFQEVK 73
>01_01_0328 - 2664412-2664535,2665388-2665465,2667784-2667895,
2668344-2668410,2668473-2668562,2668672-2668787,
2668999-2671924
Length = 1170
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = -2
Query: 283 QEVQLVNIQELHTGDVAEGASQTLILVEDYEGSLTLDTTTVAHFTLTSTKTLRLVHLKDI 104
Q L++++ LH D + L+ED + ++ + T V + +T+ LV+LK
Sbjct: 937 QAENLISLKRLHMVDCQNAKQFRMCLLEDQQLAVDVVTVVVESRVARAKETVVLVYLKCY 996
Query: 103 R 101
R
Sbjct: 997 R 997
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,840,506
Number of Sequences: 37544
Number of extensions: 365808
Number of successful extensions: 1013
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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