BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0958 (593 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0) 122 3e-28 SB_31207| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2 SB_31407| Best HMM Match : TolA (HMM E-Value=2.5) 30 1.6 SB_25665| Best HMM Match : TolA (HMM E-Value=1.7) 30 1.6 SB_23808| Best HMM Match : zf-AN1 (HMM E-Value=5.5) 28 6.5 SB_31780| Best HMM Match : Pkinase (HMM E-Value=0) 28 6.5 SB_23350| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5 SB_22853| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6 >SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0) Length = 299 Score = 122 bits (293), Expect = 3e-28 Identities = 55/104 (52%), Positives = 72/104 (69%) Frame = +2 Query: 2 EKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQR 181 EKI E+PLV++D ++ + KT AV L+ + A+ D+ K S+++RAGKGKMRNRR + R Sbjct: 142 EKIAEVPLVISDAIESVTKTSAAVKLLKAVNAYEDVEKCIDSKKIRAGKGKMRNRRTVMR 201 Query: 182 KGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGR 313 KGPLII+N DQGL +AFRN+PGVE PGGHLGR Sbjct: 202 KGPLIIYNNDQGLRQAFRNLPGVELQHVDRLNLLKLCPGGHLGR 245 Score = 34.7 bits (76), Expect = 0.057 Identities = 17/31 (54%), Positives = 19/31 (61%) Frame = +3 Query: 501 RATRKLNPLTNNKAMLKLNPYAAVLKRKAIL 593 RA K NPL N ML+LNPYA KR +L Sbjct: 250 RAIHKKNPLKNLGTMLRLNPYAKSAKRAEML 280 >SB_31207| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 194 Score = 30.3 bits (65), Expect = 1.2 Identities = 17/50 (34%), Positives = 24/50 (48%) Frame = -2 Query: 172 TTTVAHFTLTSTKTLRLVHLKDIRPCLEAPQEDDSLFGLVDLLDFVGYNQ 23 +T + HF KT R +H+K P E GL+D+LD G+ Q Sbjct: 18 STVLHHFIDKHAKTPRFLHMKP-----NGPGEGGGSSGLLDMLDAAGFEQ 62 >SB_31407| Best HMM Match : TolA (HMM E-Value=2.5) Length = 315 Score = 29.9 bits (64), Expect = 1.6 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%) Frame = -3 Query: 465 LISSDLRI-RVRSVLAIFGWGRLKFFFCFDGVFHD 364 +IS+DL I R+ +L I W R+ F CFDG D Sbjct: 281 IISADLEIQRITDLLTI--WARISDFDCFDGRISD 313 >SB_25665| Best HMM Match : TolA (HMM E-Value=1.7) Length = 697 Score = 29.9 bits (64), Expect = 1.6 Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 2/99 (2%) Frame = -2 Query: 316 ETSKMASRSQLQEVQLVNI--QELHTGDVAEGASQTLILVEDYEGSLTLDTTTVAHFTLT 143 + +M R QLQ++Q Q+ H + Q + ++ + S T DT+ V + Sbjct: 290 QQQQMQQRQQLQQLQQQQQPQQQHHQQQQQQQQQQQQLFMQGIQLSST-DTSQVNMMSPL 348 Query: 142 STKTLRLVHLKDIRPCLEAPQEDDSLFGLVDLLDFVGYN 26 S+ T ++ + P L APQ++++L + +LL N Sbjct: 349 SSPTQQVNPIPLNSPILPAPQQNNTLQNIQNLLTISSQN 387 >SB_23808| Best HMM Match : zf-AN1 (HMM E-Value=5.5) Length = 165 Score = 27.9 bits (59), Expect = 6.5 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Frame = -2 Query: 247 TGDVAEGASQTLILVEDYE--GSLTLDTTTVAHFTLTSTKTLRLVHLKDIRPCLEAPQED 74 T AE A + +E+ G + + T STK LR + LKDI C+E + Sbjct: 99 TSAAAEAALEPFQDIEETSALGQILPSSVDAVRLTKASTK-LRDIELKDIERCIEV---E 154 Query: 73 DSLFG 59 D+ FG Sbjct: 155 DTAFG 159 >SB_31780| Best HMM Match : Pkinase (HMM E-Value=0) Length = 964 Score = 27.9 bits (59), Expect = 6.5 Identities = 13/45 (28%), Positives = 26/45 (57%) Frame = -2 Query: 331 LSPDDETSKMASRSQLQEVQLVNIQELHTGDVAEGASQTLILVED 197 L+ D+E + + L++V + + + T VA G S TL+L+++ Sbjct: 557 LALDNEDGPVEEVAVLRQVSVPDFNSVGTSSVAMGTSHTLVLLQN 601 >SB_23350| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 704 Score = 27.9 bits (59), Expect = 6.5 Identities = 12/31 (38%), Positives = 20/31 (64%) Frame = -2 Query: 220 QTLILVEDYEGSLTLDTTTVAHFTLTSTKTL 128 Q LIL+ Y + L+T+++ F+L S KT+ Sbjct: 235 QELILIPYYTEKVALETSSLIEFSLLSAKTI 265 >SB_22853| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 134 Score = 27.5 bits (58), Expect = 8.6 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Frame = -2 Query: 319 DETSKMASRSQLQEVQLVNIQE-LHTGDVA 233 DETS +SRS++Q LV E LH D++ Sbjct: 39 DETSSPSSRSRIQASSLVKTNEFLHARDIS 68 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,948,867 Number of Sequences: 59808 Number of extensions: 400359 Number of successful extensions: 1410 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 1186 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1397 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1427401750 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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