Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0958
         (593 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090819-1|BAC57913.1|  400|Anopheles gambiae gag-like protein p...    27   0.35 
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    25   1.4  
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    24   3.2  

>AB090819-1|BAC57913.1|  400|Anopheles gambiae gag-like protein
           protein.
          Length = 400

 Score = 27.5 bits (58), Expect = 0.35
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 6/36 (16%)
 Frame = +2

Query: 362 GSWKTPSKQKKNFNLPQP------KMANTDLTRILK 451
           G  K P K+KK  +LP+P      K  N DL ++LK
Sbjct: 153 GQSKQPKKKKKKRSLPKPEAVVIEKCENIDLAKVLK 188


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -3

Query: 363 PNKGSSLPNAD*VQMTKRPRWPPGA 289
           P  G   P    V M  RP+ PPGA
Sbjct: 212 PRPGGMYPQPPGVPMPMRPQMPPGA 236


>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1173

 Score = 24.2 bits (50), Expect = 3.2
 Identities = 16/64 (25%), Positives = 25/64 (39%)
 Frame = +2

Query: 290  APGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRILKSDEIRE 469
            A G     +V W      RL P  G+W++    + NF+L Q    +    + L   +   
Sbjct: 901  AAGHQASGYVRWAH----RLIPDIGAWQSRKHGEVNFHLSQIISGHGFFRKYLADMKFTS 956

Query: 470  GPPC 481
             P C
Sbjct: 957  SPDC 960


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 618,104
Number of Sequences: 2352
Number of extensions: 12769
Number of successful extensions: 44
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 57188952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)