Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0958
(593 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal pro... 173 1e-43
U00031-9|AAK18871.1| 470|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical p... 29 3.3
U50191-2|AAK31556.2| 335|Caenorhabditis elegans Dumpy : shorter... 29 3.3
U50191-1|AAO38600.2| 372|Caenorhabditis elegans Dumpy : shorter... 29 3.3
L12692-1|AAA17395.2| 356|Caenorhabditis elegans collagen protein. 29 3.3
AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical... 29 3.3
AF016679-4|AAB66158.1| 430|Caenorhabditis elegans Hypothetical ... 28 4.4
>AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 4 protein.
Length = 345
Score = 173 bits (420), Expect = 1e-43
Identities = 79/155 (50%), Positives = 112/155 (72%), Gaps = 1/155 (0%)
Frame = +2
Query: 2 EKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQR 181
+++ E+PLVV+DKV+ KTK+AV+FLRR W+DI KVY S+R RAGKGK+RNR+ Q+
Sbjct: 144 DQVAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADIEKVYNSKRNRAGKGKLRNRQHKQK 203
Query: 182 KGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLF 361
GP++I+ +D RAFRNIPGV+ APGGHLGR +IWT+SAF +LD ++
Sbjct: 204 LGPVVIYGQDAECARAFRNIPGVDVMNVERLNLLKLAPGGHLGRLIIWTESAFKKLDTIY 263
Query: 362 GSWKTPSKQ-KKNFNLPQPKMANTDLTRILKSDEI 463
G+ S Q KK +++P P MAN+D +RI++S+E+
Sbjct: 264 GTTVANSSQLKKGWSVPLPIMANSDFSRIIRSEEV 298
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Frame = +3
Query: 423 PTLTSHVFSSLMRSGKV---LRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKR 581
P + + FS ++RS +V +RAP K + NPL + KLNPYA++L++
Sbjct: 282 PIMANSDFSRIIRSEEVVKAIRAPKKNPVLPKVHRNPLKKRTLLYKLNPYASILRK 337
>U00031-9|AAK18871.1| 470|Caenorhabditis elegans Hypothetical
protein B0361.8 protein.
Length = 470
Score = 29.1 bits (62), Expect = 2.5
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = -2
Query: 178 LDTTTVAHFTLTSTKTLRLVHLKDIRPCLEAPQEDDSLFGLVDLLDFVGYN 26
L+ +VA L TKT+RL+ + IRP + + L + + L+ +GYN
Sbjct: 265 LNIESVAESLLEDTKTVRLLSVGQIRPEKNHKLQLEVLHDVKEPLEKMGYN 315
>Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical
protein H38K22.1 protein.
Length = 1570
Score = 28.7 bits (61), Expect = 3.3
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +2
Query: 29 VADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQ-RLRAGKGKMRNRRRIQRKGPLIIFN 205
V V E+ KTK VI + LKA ++ +K K + R++A K M + P F+
Sbjct: 413 VVTGVTEVAKTKLEVISDKMLKACAERMKDKKPKVRIQAIKRLMDLYNHVMTSSPQPFFS 472
Query: 206 KD 211
KD
Sbjct: 473 KD 474
>U50191-2|AAK31556.2| 335|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 10, isoform a protein.
Length = 335
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +2
Query: 362 GSWKTPSKQKKNFNLPQPKMANTDLTRILKSDEIREGPPCSQQTRDP 502
GS TP K N +P M T + +++RE PPC + P
Sbjct: 113 GSSGTPGKPGLPGNAGKPGMPGTTPNQTCPLNQVREPPPCRPCPKGP 159
>U50191-1|AAO38600.2| 372|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 10, isoform b protein.
Length = 372
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +2
Query: 362 GSWKTPSKQKKNFNLPQPKMANTDLTRILKSDEIREGPPCSQQTRDP 502
GS TP K N +P M T + +++RE PPC + P
Sbjct: 150 GSSGTPGKPGLPGNAGKPGMPGTTPNQTCPLNQVREPPPCRPCPKGP 196
>L12692-1|AAA17395.2| 356|Caenorhabditis elegans collagen protein.
Length = 356
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +2
Query: 362 GSWKTPSKQKKNFNLPQPKMANTDLTRILKSDEIREGPPCSQQTRDP 502
GS TP K N +P M T + +++RE PPC + P
Sbjct: 134 GSSGTPGKPGLPGNAGKPGMPGTTPNQTCPLNQVREPPPCRPCPKGP 180
>AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical
protein H38K22.1 protein.
Length = 1570
Score = 28.7 bits (61), Expect = 3.3
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +2
Query: 29 VADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQ-RLRAGKGKMRNRRRIQRKGPLIIFN 205
V V E+ KTK VI + LKA ++ +K K + R++A K M + P F+
Sbjct: 413 VVTGVTEVAKTKLEVISDKMLKACAERMKDKKPKVRIQAIKRLMDLYNHVMTSSPQPFFS 472
Query: 206 KD 211
KD
Sbjct: 473 KD 474
>AF016679-4|AAB66158.1| 430|Caenorhabditis elegans Hypothetical
protein T28C12.3 protein.
Length = 430
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = -2
Query: 292 SQLQEVQLVNIQELHTG--DVAEGASQTLILVEDYEGSLTLDTTTVAHFTL 146
S L+ + ++ LH + E + + L++++ +E + TL TTVA+F+L
Sbjct: 281 SLLKHFEPETLESLHIEILEFDEDSVKELVILDQWEEAKTLSLTTVAYFSL 331
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,489,546
Number of Sequences: 27780
Number of extensions: 280697
Number of successful extensions: 878
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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