Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0958
         (593 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...   166   1e-41
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...   165   2e-41
At1g53120.1 68414.m06015 RNA-binding S4 domain-containing protein      29   3.1  
At1g45180.1 68414.m05180 zinc finger (C3HC4-type RING finger) fa...    29   3.1  
At2g47550.1 68415.m05934 pectinesterase family protein contains ...    28   5.4  
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea...    27   9.4  
At5g02830.1 68418.m00225 pentatricopeptide (PPR) repeat-containi...    27   9.4  
At3g28620.1 68416.m03572 zinc finger (C3HC4-type RING finger) fa...    27   9.4  
At1g64110.2 68414.m07264 AAA-type ATPase family protein contains...    27   9.4  
At1g64110.1 68414.m07263 AAA-type ATPase family protein contains...    27   9.4  
At1g26400.1 68414.m03220 FAD-binding domain-containing protein s...    27   9.4  

>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score =  166 bits (403), Expect = 1e-41
 Identities = 76/156 (48%), Positives = 107/156 (68%), Gaps = 1/156 (0%)
 Frame = +2

Query: 2   EKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQR 181
           E +PE+PLVV+D  + + KT  A+  L+++ A+ D  K   S  +R GKGKMRNRR I R
Sbjct: 151 ENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYISR 210

Query: 182 KGPLIIFNKDQG-LTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPL 358
           KGPL++F  +   + +AFRN+PGVE            APGGHLGRFVIWT+SAF +L+ +
Sbjct: 211 KGPLVVFGTEGAKIVKAFRNLPGVELCHVERLNLLKLAPGGHLGRFVIWTKSAFEKLESI 270

Query: 359 FGSWKTPSKQKKNFNLPQPKMANTDLTRILKSDEIR 466
           +GS++ PS++KK + LP+ KM N DL RI+ SDE++
Sbjct: 271 YGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEVQ 306



 Score = 36.7 bits (81), Expect = 0.012
 Identities = 17/31 (54%), Positives = 19/31 (61%)
 Frame = +3

Query: 501 RATRKLNPLTNNKAMLKLNPYAAVLKRKAIL 593
           RA  K NPL N   M KLNPYA   KR ++L
Sbjct: 318 RAVLKKNPLKNLNVMFKLNPYAKTAKRMSLL 348


>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score =  165 bits (401), Expect = 2e-41
 Identities = 76/156 (48%), Positives = 107/156 (68%), Gaps = 1/156 (0%)
 Frame = +2

Query: 2   EKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQR 181
           E +PE+PLVV+D  + + KT  A+  L+++ A+ D  K   S  +R GKGKMRNRR I R
Sbjct: 150 ENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYISR 209

Query: 182 KGPLIIFNKDQG-LTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPL 358
           KGPL+++  +   + +AFRN+PGVE            APGGHLGRFVIWT+SAF +L+ +
Sbjct: 210 KGPLVVYGTEGSKIVKAFRNLPGVELCHVERLNLLKLAPGGHLGRFVIWTKSAFEKLESI 269

Query: 359 FGSWKTPSKQKKNFNLPQPKMANTDLTRILKSDEIR 466
           +GS++ PS++KK + LP+ KM N DL RI+ SDEI+
Sbjct: 270 YGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEIQ 305



 Score = 38.7 bits (86), Expect = 0.003
 Identities = 20/41 (48%), Positives = 23/41 (56%)
 Frame = +3

Query: 471 VLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAIL 593
           V+    K   RA  K NPL N   MLKLNPYA   KR ++L
Sbjct: 307 VVNPIKKDAKRAVLKKNPLKNLNVMLKLNPYAKTAKRMSLL 347


>At1g53120.1 68414.m06015 RNA-binding S4 domain-containing protein
          Length = 320

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/63 (23%), Positives = 31/63 (49%)
 Frame = -2

Query: 193 EGSLTLDTTTVAHFTLTSTKTLRLVHLKDIRPCLEAPQEDDSLFGLVDLLDFVGYNQGKL 14
           E SL +D    A F ++ +K + L+  KD+R       ++ ++    D++   G  + K+
Sbjct: 242 EASLRIDAVASAGFKISRSKLVDLISSKDVRVNWATVTKNGTIVKTGDVVSVSGKGRLKI 301

Query: 13  GNL 5
           G +
Sbjct: 302 GEI 304


>At1g45180.1 68414.m05180 zinc finger (C3HC4-type RING finger)
           family protein similar to Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 645

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = +3

Query: 330 SPHSAGLTPYSGHGRHHQNKRRTSTCPNRRWPTLTSHVFSS-LMRSGKVLRAPNKRVIRA 506
           SP S  LTPY  +  H  N+RR S   N R   L+S V      RS     +PN+ V+++
Sbjct: 396 SPSSPALTPYQNNSLH--NQRRLS--ENFRRSLLSSLVTQQRAARSLAHPASPNEHVLQS 451

Query: 507 TRKLNPLTNNKAMLKLNP 560
                   +N+A  +  P
Sbjct: 452 GGDNTSQVHNRASSRAGP 469


>At2g47550.1 68415.m05934 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 560

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = -2

Query: 277 VQLVNIQELHTGDVAEGASQTLILVED--YEGSLTLDTTTVAHFTLTSTKTLRLVHLKDI 104
           + +++ +    G VA  A  T+  +ED  +  SLT+D    +  T  STKTL L   +D+
Sbjct: 78  ISMIDAELDRKGKVA--AKSTVGALEDCKFLASLTMDYLLSSSQTADSTKTLSLSRAEDV 135

Query: 103 RPCLEA 86
              L A
Sbjct: 136 HTFLSA 141


>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
           family protein similar to katanin p80 subunit
           [Strongylocentrotus purpuratus] GI:3005601; contains
           Pfam profile PF00400: WD domain, G-beta repeat
          Length = 871

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 325 PDDETSKMASRSQLQEVQLVNIQELHTGDVAEGAS 221
           PD  TS +  RSQ Q ++ + +Q+ +T    EG S
Sbjct: 611 PDLPTSSLLERSQSQPIEPITLQDGNTYPSDEGGS 645


>At5g02830.1 68418.m00225 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 852

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = +3

Query: 375 HHQNKRRTSTCPNRRWPTLTSHVFSSLMRSGKVLRAPNKRVIRATRKLNPLTNN 536
           HH ++R  +T P     T ++  F+ L+ S     +P+   + AT  L+   +N
Sbjct: 18  HHHHRRCYATAPESNRKTKSNSSFTKLLPSLPQQHSPSPASVSATHSLSSHFSN 71


>At3g28620.1 68416.m03572 zinc finger (C3HC4-type RING finger)
           family protein low similarity to RING-H2 finger protein
           RHA2b [Arabidopsis thaliana] GI:3790571; contains Pfam
           profile PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 211

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 434 LTRILKSDEIREGPPCSQQTRDPCYTQ 514
           L  +L+S++  E P CS    +PC T+
Sbjct: 164 LENLLRSEDYCEMPTCSHYFHEPCLTE 190


>At1g64110.2 68414.m07264 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family
          Length = 829

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 18/77 (23%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
 Frame = -2

Query: 325 PDDETSKMASRSQLQ-EVQLVNIQELHTGDVAEGASQTLILVEDYEGSLTLDTTTVAHF- 152
           P+DET  ++ +SQL+ ++ ++  Q+ +   + E  S+  ++ +D E     DT  ++++ 
Sbjct: 337 PEDETHLVSWKSQLERDMNMIQTQD-NRNHIMEVLSENDLICDDLESISFEDTKVLSNYI 395

Query: 151 --TLTSTKTLRLVHLKD 107
              + S  +  L++ KD
Sbjct: 396 EEIVVSALSYHLMNNKD 412


>At1g64110.1 68414.m07263 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family
          Length = 824

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 18/77 (23%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
 Frame = -2

Query: 325 PDDETSKMASRSQLQ-EVQLVNIQELHTGDVAEGASQTLILVEDYEGSLTLDTTTVAHF- 152
           P+DET  ++ +SQL+ ++ ++  Q+ +   + E  S+  ++ +D E     DT  ++++ 
Sbjct: 332 PEDETHLVSWKSQLERDMNMIQTQD-NRNHIMEVLSENDLICDDLESISFEDTKVLSNYI 390

Query: 151 --TLTSTKTLRLVHLKD 107
              + S  +  L++ KD
Sbjct: 391 EEIVVSALSYHLMNNKD 407


>At1g26400.1 68414.m03220 FAD-binding domain-containing protein
          similar to SP|P30986 reticuline oxidase precursor
          (Berberine-bridge-forming enzyme) (BBE)
          (Tetrahydroprotoberberine synthase) [Eschscholzia
          californica]; contains PF01565 FAD binding domain
          Length = 527

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -3

Query: 66 CLVLLISWTLSATTRGSSGIFS 1
          CLVLL+S   +A T+  SGIF+
Sbjct: 9  CLVLLVSILRAAVTKPDSGIFT 30


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,070,042
Number of Sequences: 28952
Number of extensions: 273463
Number of successful extensions: 787
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)