Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0955
(673 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC24B10.21 |tpi1|tpi|triosephosphate isomerase|Schizosaccharom... 219 2e-58
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 33 0.037
SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p... 29 0.61
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p... 27 3.3
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 26 4.3
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc... 26 5.7
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 26 5.7
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 26 5.7
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 25 7.5
SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces... 25 7.5
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 25 7.5
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar... 25 9.9
>SPCC24B10.21 |tpi1|tpi|triosephosphate
isomerase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 249
Score = 219 bits (536), Expect = 2e-58
Identities = 108/225 (48%), Positives = 141/225 (62%), Gaps = 1/225 (0%)
Frame = +2
Query: 2 VGGNWKMNGDKNQINEIVNNLKKGPLDP-NVEVIVGVPAIYLSYVKTIIPDNVEVAAQNC 178
VGGN+KMNG + I+ L L+ +VE ++ +YL + + ++ V AQN
Sbjct: 7 VGGNFKMNGSLESMKTIIEGLNTTKLNVGDVETVIFPQNMYLITTRQQVKKDIGVGAQNV 66
Query: 179 WKSPKGAFTGEISPAMIKDVGVNXVILGHSERRTIFGEKDELVAEKVAHALESGLKVIAC 358
+ GA+TGE S + D G+ + GHSERRTIF E DE VA+K ALE GL V+AC
Sbjct: 67 FDKKNGAYTGENSAQSLIDAGITYTLTGHSERRTIFKESDEFVADKTKFALEQGLTVVAC 126
Query: 359 IGETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAIGTGKTATPQQAQDVH 538
IGETL ERE+ +T VV RQL A+ + W IV+AYEPVWAIGTGKTATP+QAQ+VH
Sbjct: 127 IGETLAEREANETINVVVRQLNAIADKV-QNWSKIVIAYEPVWAIGTGKTATPEQAQEVH 185
Query: 539 HALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFL 673
+R W + + SV++ +R+ YGGSV N KE DIDGFL
Sbjct: 186 AEIRKWATNKLGASVAEGLRVIYGGSVNGGNCKEFLKFHDIDGFL 230
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 33.1 bits (72), Expect = 0.037
Identities = 20/54 (37%), Positives = 29/54 (53%)
Frame = -1
Query: 292 FTKNCSSFRMTKYNPIYSNVFDHSG*NFTSKSSFWRLPTVLGCNFDIIRNDSLH 131
F + ++ TK N + SN+F+H+ + T +SS T L IIRNDS H
Sbjct: 26 FHSSVANIHFTKENNLKSNIFEHNNNSPTLRSSSVACNTCL----KIIRNDSFH 75
>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 579
Score = 29.1 bits (62), Expect = 0.61
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +2
Query: 473 YEPVWAIGTGKT--ATPQQAQDVHHALRNWLSANVSGSVSDAVRI 601
Y +W++G TP+ + VH LR WL V G DA+ +
Sbjct: 172 YLHLWSVGQPDLNWETPKVREAVHDILRFWLDRGVDGFRLDAINM 216
>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 718
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = -1
Query: 616 RATVLNTYSVRYTPTHIGRQPVTKSMVDILSLLGSSSLACTNS 488
+AT + + Y P +G K + LSL + ++ C NS
Sbjct: 165 KATKFPHFGILYHPESVGSSKSLKIFKNFLSLADTPNIQCVNS 207
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 26.2 bits (55), Expect = 4.3
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 548 EEHGGHLEPVGE*QSCLYQ*PIQVHRQAQYFP 453
+ +GG+L P E S ++ PI++ R A Y+P
Sbjct: 69 KSYGGNLAPFDEEFSFHFRGPIELKRFAVYYP 100
>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 849
Score = 25.8 bits (54), Expect = 5.7
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = -2
Query: 519 WGVAVLPVPIAHTGS*ASTIFSHLSPMADTKAFNCLKTTSSVLPDSLSSRVSPIQAMTF 343
+ + +LP I S A +F +P ++ F CL + +L L+S V +Q ++
Sbjct: 226 YSLFLLPRLIRKQLSDAPIVFFLHAPFCTSEVFRCLSKRAEILKGVLASNVIAMQTDSY 284
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 25.8 bits (54), Expect = 5.7
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -2
Query: 447 SPMADTKAFN-CLKTTSSVLPDSLSSRVSP 361
SP+ TK+FN L ++SS+L + S SP
Sbjct: 220 SPLTKTKSFNDALTSSSSILKPCMPSIASP 249
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 5.7
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 584 SDAVRIQYGGSVTAANAKELASCKDIDGF 670
SD R Q+G S+ +NAKEL I G+
Sbjct: 259 SDLSRGQHGKSIILSNAKELYKSVGIRGY 287
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 25.4 bits (53), Expect = 7.5
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 149 DNVEVAAQNCWKSPKGAFTGEISPA 223
D E A+ SP G+FT +ISPA
Sbjct: 752 DGHEQASPLVSSSPSGSFTSQISPA 776
>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 287
Score = 25.4 bits (53), Expect = 7.5
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +2
Query: 518 QQAQDVHHALRNWLSA 565
+Q Q+ H +RNWLS+
Sbjct: 186 KQTQETHERIRNWLSS 201
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 25.4 bits (53), Expect = 7.5
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Frame = -1
Query: 238 NVFDHSG*NFTSKSSFWRLPTVLGCNFDIIRNDSLHIRQVNSRNTNNYLNIRI*RSLF*I 59
N+FD + KS F + N +I DS ++ NT N SLF
Sbjct: 193 NIFDLDSGKWVFKSLFNHHCGIYRSNCVVINKDSEFLQMCRPINTTQDSNEHSIGSLFFY 252
Query: 58 INY-FVDLIFVTIHL 17
+NY FV++ I+L
Sbjct: 253 LNYNFVNVKRQVIYL 267
>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 524
Score = 25.0 bits (52), Expect = 9.9
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +2
Query: 134 KTIIPDNVEVAAQNCWKSPKGAFTG 208
+ +I D+V + Q+CWK + A G
Sbjct: 231 RIVIRDSVTLEPQHCWKHHRDAVMG 255
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,776,209
Number of Sequences: 5004
Number of extensions: 60085
Number of successful extensions: 204
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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