Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0955
         (673 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0079 - 20732041-20732097,20732219-20732301,20732661-207328...   270   7e-73
01_06_1301 + 36122797-36122838,36122958-36123033,36123145-361232...   257   5e-69
01_01_0322 - 2589074-2589121,2589214-2589296,2589414-2589492,258...   256   9e-69
03_05_1169 + 30892888-30892916,30894786-30894822,30895091-308951...    33   0.27 
02_03_0230 + 16620856-16620991,16622157-16622239,16632090-166321...    31   0.84 
01_06_0627 - 30705604-30706977                                         29   2.6  
04_04_0148 - 23114000-23114113,23114215-23114350,23114813-231149...    29   4.5  
01_06_0192 + 27347369-27348826,27349124-27349264,27349350-273510...    28   5.9  
08_02_0546 - 18474217-18475133,18475207-18475396,18475870-184763...    28   7.8  
01_06_1409 - 37111954-37112061,37112295-37112330,37112434-371124...    28   7.8  

>09_06_0079 -
           20732041-20732097,20732219-20732301,20732661-20732834,
           20732927-20733059,20733226-20733310,20733527-20733650,
           20733835-20733904,20734643-20734669,20734788-20734949
          Length = 304

 Score =  270 bits (662), Expect = 7e-73
 Identities = 124/224 (55%), Positives = 161/224 (71%)
 Frame = +2

Query: 2   VGGNWKMNGDKNQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIPDNVEVAAQNCW 181
           VGGNWK NG K+ ++++V  L    L+P+V+V+V  P IY+  VK  + D +EV+AQN W
Sbjct: 57  VGGNWKCNGTKDSVSKLVTELNAATLEPDVDVVVAPPFIYIDQVKNSLTDRIEVSAQNVW 116

Query: 182 KSPKGAFTGEISPAMIKDVGVNXVILGHSERRTIFGEKDELVAEKVAHALESGLKVIACI 361
               GA+TGEIS   + D+G   VILGHSERR + GE D+ + +K A+AL   +KVIACI
Sbjct: 117 IGKGGAYTGEISAEQLVDIGCQWVILGHSERRHVIGEDDQFIGKKAAYALSQNVKVIACI 176

Query: 362 GETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAIGTGKTATPQQAQDVHH 541
           GE LEERE+GKT +V F+Q+KA   +I   W ++V+AYEPVWAIGTGK ATP+QAQ+VH 
Sbjct: 177 GELLEEREAGKTFDVCFKQMKAFADSI-TNWADVVIAYEPVWAIGTGKVATPEQAQEVHA 235

Query: 542 ALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFL 673
           A+R+WL  NVS  V+  +RI YGGSV AAN  ELA  +DIDGFL
Sbjct: 236 AVRDWLKTNVSPEVASGIRIIYGGSVNAANCAELAKKEDIDGFL 279


>01_06_1301 +
           36122797-36122838,36122958-36123033,36123145-36123268,
           36123675-36123759,36124076-36124208,36124712-36124806,
           36124982-36125060,36125205-36125287,36125505-36125555
          Length = 255

 Score =  257 bits (630), Expect = 5e-69
 Identities = 127/226 (56%), Positives = 157/226 (69%), Gaps = 2/226 (0%)
 Frame = +2

Query: 2   VGGNWKMNGDKNQINEIVNNLKKG--PLDPNVEVIVGVPAIYLSYVKTIIPDNVEVAAQN 175
           VGGNWK NG    + +IV  L +   P +  VEV+V  P ++L  VK ++  +  VAAQN
Sbjct: 8   VGGNWKCNGTGEDVKKIVTVLNEAEVPSEDVVEVVVSPPFVFLPQVKGLLRPDFSVAAQN 67

Query: 176 CWKSPKGAFTGEISPAMIKDVGVNXVILGHSERRTIFGEKDELVAEKVAHALESGLKVIA 355
           CW    GAFTGEIS  M+ ++ V  VILGHSERR + GE  + VA+K+A+AL  G+KVIA
Sbjct: 68  CWVRKGGAFTGEISAEMLVNLQVPWVILGHSERRALMGESSDFVADKIAYALSQGIKVIA 127

Query: 356 CIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAIGTGKTATPQQAQDV 535
           CIGETLE+RE+G T EVV  Q KA+   I D W N+VLAYEPVWAIGTGK ATP QAQ+V
Sbjct: 128 CIGETLEQREAGTTMEVVAAQTKAIAEKISD-WTNVVLAYEPVWAIGTGKVATPAQAQEV 186

Query: 536 HHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFL 673
           H  LR WL  NVS +V+++ RI Y GSV  AN KELA+  D+DGFL
Sbjct: 187 HDGLRKWLVTNVSPAVAESTRIIYRGSVNGANCKELAAKPDVDGFL 232


>01_01_0322 -
           2589074-2589121,2589214-2589296,2589414-2589492,
           2589622-2589716,2590198-2590330,2590601-2590685,
           2591040-2591163,2591297-2591372,2594305-2594319
          Length = 245

 Score =  256 bits (628), Expect = 9e-69
 Identities = 123/221 (55%), Positives = 161/221 (72%), Gaps = 2/221 (0%)
 Frame = +2

Query: 17  KMNGDKNQINEIVNNLKKGPLDPN--VEVIVGVPAIYLSYVKTIIPDNVEVAAQNCWKSP 190
           ++NG  +Q+++IV  L +G +     VEV+V  P ++L  VK+ +   ++VAAQNCW   
Sbjct: 4   ELNGTTDQVDKIVKILNEGQIASTDVVEVVVSPPYVFLPVVKSQLRPEIQVAAQNCWVKK 63

Query: 191 KGAFTGEISPAMIKDVGVNXVILGHSERRTIFGEKDELVAEKVAHALESGLKVIACIGET 370
            GAFTGE+S  M+ ++ +  VILGHSERR++ GE +E V +KVA+AL  GLKVIAC+GET
Sbjct: 64  GGAFTGEVSAEMLVNLSIPWVILGHSERRSLLGESNEFVGDKVAYALSQGLKVIACVGET 123

Query: 371 LEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAIGTGKTATPQQAQDVHHALR 550
           LE+RESG T +VV  Q KA+   I D W N+V+AYEPVWAIGTGK ATP QAQ+VH  LR
Sbjct: 124 LEQRESGSTMDVVAAQTKAISERIKD-WTNVVVAYEPVWAIGTGKVATPDQAQEVHDGLR 182

Query: 551 NWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFL 673
            WL+ANVS  V+++ RI YGGSVT AN KELA+  D+DGFL
Sbjct: 183 KWLAANVSAEVAESTRIIYGGSVTGANCKELAAKPDVDGFL 223


>03_05_1169 +
           30892888-30892916,30894786-30894822,30895091-30895146,
           30895192-30895306,30896063-30896127,30896218-30896299,
           30896420-30896479
          Length = 147

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 21/49 (42%), Positives = 27/49 (55%)
 Frame = +2

Query: 527 QDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFL 673
           Q VH  LR  L+ NV   ++   R     S TA+N KELA   D++GFL
Sbjct: 78  QTVHGGLRKLLTTNVRIHMNHLCR-----SCTASNCKELAVQPDLNGFL 121


>02_03_0230 +
           16620856-16620991,16622157-16622239,16632090-16632149,
           16632795-16632903,16633285-16633337,16633503-16633559,
           16633730-16633846
          Length = 204

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 22/64 (34%), Positives = 34/64 (53%)
 Frame = +2

Query: 284 FGEKDELVAEKVAHALESGLKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENI 463
           F E+ EL    VA   ES L +     +T EE ++ K  ++ F + +ALV+A     +N+
Sbjct: 142 FIERAELKQMMVATLAESDLNLT---DQTFEEADTNKDGKIDFEEWQALVNAHPCLLKNM 198

Query: 464 VLAY 475
            LAY
Sbjct: 199 TLAY 202


>01_06_0627 - 30705604-30706977
          Length = 457

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +2

Query: 479 PVWAIGTGKTATPQQAQDVHHALRNWLSANVSGSVSDAVRIQYG--GSVTAANAKELA 646
           PV+ +G    +  ++   V HA   WL A  + SV   V + +G  GS +AA  KE+A
Sbjct: 223 PVYCVGPLVASGEEEGGGVRHACLAWLDAQPARSV---VFLCFGSMGSFSAAQLKEIA 277


>04_04_0148 -
           23114000-23114113,23114215-23114350,23114813-23114912,
           23115003-23115113,23115197-23115234,23115359-23115429,
           23116998-23117176,23117272-23117389
          Length = 288

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 172 LGCNFDIIRNDSLHIRQVNSRNTNNYL 92
           LG NF++ RND L I  V  +N    L
Sbjct: 104 LGLNFEVYRNDELTIEDVKRKNPRGIL 130


>01_06_0192 + 27347369-27348826,27349124-27349264,27349350-27351081,
            27353739-27354606,27354784-27355957
          Length = 1790

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -1

Query: 664  INVFAGCKLLSISSCDRATVLNTYSVRYTPTHIGRQPVTKSMVDILSLLG 515
            +  FA  K +  SS ++  V +T+   Y P+ I ++ + K +  ILS  G
Sbjct: 963  LKAFASIKQVIFSSMEKNNVPHTFWSSYLPSLIQQKGIAKRIASILSGYG 1012


>08_02_0546 -
           18474217-18475133,18475207-18475396,18475870-18476313,
           18476629-18477495,18478858-18479367
          Length = 975

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 20/76 (26%), Positives = 30/76 (39%)
 Frame = +2

Query: 257 LGHSERRTIFGEKDELVAEKVAHALESGLKVIACIGETLEERESGKTEEVVFRQLKALVS 436
           + H   R    E D +V  K+   + S L+      + +EE +S ++       L  L  
Sbjct: 425 ISHEYHRKRKQETDVVVHSKIETYIRSSLRT--AFAQKMEEADSKRSSRHPVPVLSILAK 482

Query: 437 AIGDKWENIVLAYEPV 484
           AIGD        Y PV
Sbjct: 483 AIGDLATKEKTVYSPV 498


>01_06_1409 -
           37111954-37112061,37112295-37112330,37112434-37112498,
           37112610-37112688,37112967-37113041,37113623-37114147
          Length = 295

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -3

Query: 410 KQLPQSCQILSLRESHQYRQ*LSSQIQGHEQPFQQQVHLFHQKLFFFQNDQ 258
           ++LPQ   +   ++  Q +Q L  Q Q  +Q  QQQ     QKL   Q  Q
Sbjct: 44  QKLPQHQHLQQQQQQQQQQQKLQQQQQQQQQKLQQQQQQQQQKLQQQQQQQ 94


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,758,399
Number of Sequences: 37544
Number of extensions: 381943
Number of successful extensions: 963
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)