BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0955 (673 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 09_06_0079 - 20732041-20732097,20732219-20732301,20732661-207328... 270 7e-73 01_06_1301 + 36122797-36122838,36122958-36123033,36123145-361232... 257 5e-69 01_01_0322 - 2589074-2589121,2589214-2589296,2589414-2589492,258... 256 9e-69 03_05_1169 + 30892888-30892916,30894786-30894822,30895091-308951... 33 0.27 02_03_0230 + 16620856-16620991,16622157-16622239,16632090-166321... 31 0.84 01_06_0627 - 30705604-30706977 29 2.6 04_04_0148 - 23114000-23114113,23114215-23114350,23114813-231149... 29 4.5 01_06_0192 + 27347369-27348826,27349124-27349264,27349350-273510... 28 5.9 08_02_0546 - 18474217-18475133,18475207-18475396,18475870-184763... 28 7.8 01_06_1409 - 37111954-37112061,37112295-37112330,37112434-371124... 28 7.8 >09_06_0079 - 20732041-20732097,20732219-20732301,20732661-20732834, 20732927-20733059,20733226-20733310,20733527-20733650, 20733835-20733904,20734643-20734669,20734788-20734949 Length = 304 Score = 270 bits (662), Expect = 7e-73 Identities = 124/224 (55%), Positives = 161/224 (71%) Frame = +2 Query: 2 VGGNWKMNGDKNQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIPDNVEVAAQNCW 181 VGGNWK NG K+ ++++V L L+P+V+V+V P IY+ VK + D +EV+AQN W Sbjct: 57 VGGNWKCNGTKDSVSKLVTELNAATLEPDVDVVVAPPFIYIDQVKNSLTDRIEVSAQNVW 116 Query: 182 KSPKGAFTGEISPAMIKDVGVNXVILGHSERRTIFGEKDELVAEKVAHALESGLKVIACI 361 GA+TGEIS + D+G VILGHSERR + GE D+ + +K A+AL +KVIACI Sbjct: 117 IGKGGAYTGEISAEQLVDIGCQWVILGHSERRHVIGEDDQFIGKKAAYALSQNVKVIACI 176 Query: 362 GETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAIGTGKTATPQQAQDVHH 541 GE LEERE+GKT +V F+Q+KA +I W ++V+AYEPVWAIGTGK ATP+QAQ+VH Sbjct: 177 GELLEEREAGKTFDVCFKQMKAFADSI-TNWADVVIAYEPVWAIGTGKVATPEQAQEVHA 235 Query: 542 ALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFL 673 A+R+WL NVS V+ +RI YGGSV AAN ELA +DIDGFL Sbjct: 236 AVRDWLKTNVSPEVASGIRIIYGGSVNAANCAELAKKEDIDGFL 279 >01_06_1301 + 36122797-36122838,36122958-36123033,36123145-36123268, 36123675-36123759,36124076-36124208,36124712-36124806, 36124982-36125060,36125205-36125287,36125505-36125555 Length = 255 Score = 257 bits (630), Expect = 5e-69 Identities = 127/226 (56%), Positives = 157/226 (69%), Gaps = 2/226 (0%) Frame = +2 Query: 2 VGGNWKMNGDKNQINEIVNNLKKG--PLDPNVEVIVGVPAIYLSYVKTIIPDNVEVAAQN 175 VGGNWK NG + +IV L + P + VEV+V P ++L VK ++ + VAAQN Sbjct: 8 VGGNWKCNGTGEDVKKIVTVLNEAEVPSEDVVEVVVSPPFVFLPQVKGLLRPDFSVAAQN 67 Query: 176 CWKSPKGAFTGEISPAMIKDVGVNXVILGHSERRTIFGEKDELVAEKVAHALESGLKVIA 355 CW GAFTGEIS M+ ++ V VILGHSERR + GE + VA+K+A+AL G+KVIA Sbjct: 68 CWVRKGGAFTGEISAEMLVNLQVPWVILGHSERRALMGESSDFVADKIAYALSQGIKVIA 127 Query: 356 CIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAIGTGKTATPQQAQDV 535 CIGETLE+RE+G T EVV Q KA+ I D W N+VLAYEPVWAIGTGK ATP QAQ+V Sbjct: 128 CIGETLEQREAGTTMEVVAAQTKAIAEKISD-WTNVVLAYEPVWAIGTGKVATPAQAQEV 186 Query: 536 HHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFL 673 H LR WL NVS +V+++ RI Y GSV AN KELA+ D+DGFL Sbjct: 187 HDGLRKWLVTNVSPAVAESTRIIYRGSVNGANCKELAAKPDVDGFL 232 >01_01_0322 - 2589074-2589121,2589214-2589296,2589414-2589492, 2589622-2589716,2590198-2590330,2590601-2590685, 2591040-2591163,2591297-2591372,2594305-2594319 Length = 245 Score = 256 bits (628), Expect = 9e-69 Identities = 123/221 (55%), Positives = 161/221 (72%), Gaps = 2/221 (0%) Frame = +2 Query: 17 KMNGDKNQINEIVNNLKKGPLDPN--VEVIVGVPAIYLSYVKTIIPDNVEVAAQNCWKSP 190 ++NG +Q+++IV L +G + VEV+V P ++L VK+ + ++VAAQNCW Sbjct: 4 ELNGTTDQVDKIVKILNEGQIASTDVVEVVVSPPYVFLPVVKSQLRPEIQVAAQNCWVKK 63 Query: 191 KGAFTGEISPAMIKDVGVNXVILGHSERRTIFGEKDELVAEKVAHALESGLKVIACIGET 370 GAFTGE+S M+ ++ + VILGHSERR++ GE +E V +KVA+AL GLKVIAC+GET Sbjct: 64 GGAFTGEVSAEMLVNLSIPWVILGHSERRSLLGESNEFVGDKVAYALSQGLKVIACVGET 123 Query: 371 LEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAIGTGKTATPQQAQDVHHALR 550 LE+RESG T +VV Q KA+ I D W N+V+AYEPVWAIGTGK ATP QAQ+VH LR Sbjct: 124 LEQRESGSTMDVVAAQTKAISERIKD-WTNVVVAYEPVWAIGTGKVATPDQAQEVHDGLR 182 Query: 551 NWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFL 673 WL+ANVS V+++ RI YGGSVT AN KELA+ D+DGFL Sbjct: 183 KWLAANVSAEVAESTRIIYGGSVTGANCKELAAKPDVDGFL 223 >03_05_1169 + 30892888-30892916,30894786-30894822,30895091-30895146, 30895192-30895306,30896063-30896127,30896218-30896299, 30896420-30896479 Length = 147 Score = 32.7 bits (71), Expect = 0.27 Identities = 21/49 (42%), Positives = 27/49 (55%) Frame = +2 Query: 527 QDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFL 673 Q VH LR L+ NV ++ R S TA+N KELA D++GFL Sbjct: 78 QTVHGGLRKLLTTNVRIHMNHLCR-----SCTASNCKELAVQPDLNGFL 121 >02_03_0230 + 16620856-16620991,16622157-16622239,16632090-16632149, 16632795-16632903,16633285-16633337,16633503-16633559, 16633730-16633846 Length = 204 Score = 31.1 bits (67), Expect = 0.84 Identities = 22/64 (34%), Positives = 34/64 (53%) Frame = +2 Query: 284 FGEKDELVAEKVAHALESGLKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENI 463 F E+ EL VA ES L + +T EE ++ K ++ F + +ALV+A +N+ Sbjct: 142 FIERAELKQMMVATLAESDLNLT---DQTFEEADTNKDGKIDFEEWQALVNAHPCLLKNM 198 Query: 464 VLAY 475 LAY Sbjct: 199 TLAY 202 >01_06_0627 - 30705604-30706977 Length = 457 Score = 29.5 bits (63), Expect = 2.6 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%) Frame = +2 Query: 479 PVWAIGTGKTATPQQAQDVHHALRNWLSANVSGSVSDAVRIQYG--GSVTAANAKELA 646 PV+ +G + ++ V HA WL A + SV V + +G GS +AA KE+A Sbjct: 223 PVYCVGPLVASGEEEGGGVRHACLAWLDAQPARSV---VFLCFGSMGSFSAAQLKEIA 277 >04_04_0148 - 23114000-23114113,23114215-23114350,23114813-23114912, 23115003-23115113,23115197-23115234,23115359-23115429, 23116998-23117176,23117272-23117389 Length = 288 Score = 28.7 bits (61), Expect = 4.5 Identities = 12/27 (44%), Positives = 15/27 (55%) Frame = -1 Query: 172 LGCNFDIIRNDSLHIRQVNSRNTNNYL 92 LG NF++ RND L I V +N L Sbjct: 104 LGLNFEVYRNDELTIEDVKRKNPRGIL 130 >01_06_0192 + 27347369-27348826,27349124-27349264,27349350-27351081, 27353739-27354606,27354784-27355957 Length = 1790 Score = 28.3 bits (60), Expect = 5.9 Identities = 15/50 (30%), Positives = 26/50 (52%) Frame = -1 Query: 664 INVFAGCKLLSISSCDRATVLNTYSVRYTPTHIGRQPVTKSMVDILSLLG 515 + FA K + SS ++ V +T+ Y P+ I ++ + K + ILS G Sbjct: 963 LKAFASIKQVIFSSMEKNNVPHTFWSSYLPSLIQQKGIAKRIASILSGYG 1012 >08_02_0546 - 18474217-18475133,18475207-18475396,18475870-18476313, 18476629-18477495,18478858-18479367 Length = 975 Score = 27.9 bits (59), Expect = 7.8 Identities = 20/76 (26%), Positives = 30/76 (39%) Frame = +2 Query: 257 LGHSERRTIFGEKDELVAEKVAHALESGLKVIACIGETLEERESGKTEEVVFRQLKALVS 436 + H R E D +V K+ + S L+ + +EE +S ++ L L Sbjct: 425 ISHEYHRKRKQETDVVVHSKIETYIRSSLRT--AFAQKMEEADSKRSSRHPVPVLSILAK 482 Query: 437 AIGDKWENIVLAYEPV 484 AIGD Y PV Sbjct: 483 AIGDLATKEKTVYSPV 498 >01_06_1409 - 37111954-37112061,37112295-37112330,37112434-37112498, 37112610-37112688,37112967-37113041,37113623-37114147 Length = 295 Score = 27.9 bits (59), Expect = 7.8 Identities = 17/51 (33%), Positives = 24/51 (47%) Frame = -3 Query: 410 KQLPQSCQILSLRESHQYRQ*LSSQIQGHEQPFQQQVHLFHQKLFFFQNDQ 258 ++LPQ + ++ Q +Q L Q Q +Q QQQ QKL Q Q Sbjct: 44 QKLPQHQHLQQQQQQQQQQQKLQQQQQQQQQKLQQQQQQQQQKLQQQQQQQ 94 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,758,399 Number of Sequences: 37544 Number of extensions: 381943 Number of successful extensions: 963 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 937 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 958 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1703141568 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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