Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0955
(673 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5619| Best HMM Match : No HMM Matches (HMM E-Value=.) 183 1e-46
SB_12178| Best HMM Match : TIM (HMM E-Value=0) 169 2e-42
SB_2385| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_41634| Best HMM Match : DUF1518 (HMM E-Value=5.9) 30 1.5
SB_39600| Best HMM Match : Sushi (HMM E-Value=0) 30 2.0
SB_44183| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_16761| Best HMM Match : PDZ (HMM E-Value=1.6e-08) 29 4.5
SB_54138| Best HMM Match : rve (HMM E-Value=6.8e-24) 28 6.0
SB_56497| Best HMM Match : Extensin_2 (HMM E-Value=0.16) 28 6.0
SB_25405| Best HMM Match : DUF343 (HMM E-Value=0.076) 28 6.0
SB_52498| Best HMM Match : Chromate_transp (HMM E-Value=0.17) 28 7.9
>SB_5619| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 399
Score = 183 bits (446), Expect = 1e-46
Identities = 102/193 (52%), Positives = 126/193 (65%)
Frame = +2
Query: 95 VIVGVPAIYLSYVKTIIPDNVEVAAQNCWKSPKGAFTGEISPAMIKDVGVNXVILGHSER 274
++V PA+YLSYV+ N+ VAAQNC+K GA L ++
Sbjct: 218 IVVSPPALYLSYVRKAAKQNIGVAAQNCYKVASGA-------------------LHWGDQ 258
Query: 275 RTIFGEKDELVAEKVAHALESGLKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKW 454
+ GEK VAHAL + +KVIACIGE L ERE+GKT+EVVFRQ+KA+ I D W
Sbjct: 259 --LIGEK-------VAHALSANVKVIACIGELLSEREAGKTQEVVFRQIKAIADKISD-W 308
Query: 455 ENIVLAYEPVWAIGTGKTATPQQAQDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANA 634
+V+AYEPVWAIGTGKTATPQQAQ+VH+ LR WL NVS V+++ RI YGGSV A N
Sbjct: 309 SKVVIAYEPVWAIGTGKTATPQQAQEVHNQLRAWLKENVSVDVAESTRIIYGGSVNAKNC 368
Query: 635 KELASCKDIDGFL 673
+ELA+ DIDGFL
Sbjct: 369 RELAAEGDIDGFL 381
>SB_12178| Best HMM Match : TIM (HMM E-Value=0)
Length = 203
Score = 169 bits (410), Expect = 2e-42
Identities = 81/176 (46%), Positives = 118/176 (67%), Gaps = 1/176 (0%)
Frame = +2
Query: 149 DNVEVAAQNCWKSPKGAFTGEISPAMIKDVGVNXVILGHSERRTIFGEKDELVAEKVAHA 328
D++ AQNC + GA+TGE+S AM+ +GVN VI+GHSERR F E +E +A+KV A
Sbjct: 7 DHISTGAQNCHEKASGAYTGEVSAAMLAHLGVNYVIIGHSERREYFNESNEQLAQKVDAA 66
Query: 329 LESGLKVIACIGETLEERESGKTEEVVFRQLK-ALVSAIGDKWENIVLAYEPVWAIGTGK 505
L + L+VI C GE+LE R++ V +Q+K +L ++ +N+V+AYEP+WAIGTG+
Sbjct: 67 LVNNLQVIFCCGESLEIRDADGQNNFVEQQIKESLFHLSEEQMKNVVVAYEPIWAIGTGR 126
Query: 506 TATPQQAQDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFL 673
TA+ +QAQD+H +R+ L++ ++D I YGGS NA EL +C D+DG L
Sbjct: 127 TASSEQAQDIHAHIRSVLASKYGDDLADDTTILYGGSCKPGNADELFACPDVDGGL 182
>SB_2385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 122
Score = 40.7 bits (91), Expect = 0.001
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +2
Query: 86 NVEVIVGVPAIYLSYVKTIIPDNVEVAAQNCWKSPKGAFTGE 211
+ EV++ PA+Y +++ +P +A QN +K GAFTGE
Sbjct: 79 DTEVVISPPAVYADFLRANMPAEFGLALQNVYKEGSGAFTGE 120
Score = 34.7 bits (76), Expect = 0.069
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 2 VGGNWKMNGDKNQINEIVNNLKKGPLDPNV 91
VGGNWK+NG + I E++ K LD +V
Sbjct: 7 VGGNWKLNGSRASIQELLEAWGKADLDKSV 36
>SB_41634| Best HMM Match : DUF1518 (HMM E-Value=5.9)
Length = 321
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -1
Query: 667 TINVFAGCKLLSISSCDRATVLNTYSVRYTPTHIGRQPVTKSMV 536
T +F K+ S C+R T+ +S Y+P +G++ V S V
Sbjct: 51 TTTIFLS-KIFSAKKCNRGTLSKNWSGPYSPDRVGKRRVPNSRV 93
>SB_39600| Best HMM Match : Sushi (HMM E-Value=0)
Length = 1368
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 508 CYSPTGSRCPPCSS*LVVGQCEWECI 585
C+ P+GS CPP L GQC + C+
Sbjct: 283 CF-PSGSDCPPNHKCLCDGQCGYSCV 307
>SB_44183| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 751
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = -2
Query: 252 TXFTPTSLIIAGEISPVKAPFGDFQQFWAATSTLSGMIVFT*DR*IAGTPTITSTLG 82
T T +II G + + PF W T+T+ + +F + GTP TS G
Sbjct: 254 TWLTYIIMIILGHLVILSVPFFATSTAWTLTNTMHNLCMFLLLHYVKGTPFETSDQG 310
>SB_16761| Best HMM Match : PDZ (HMM E-Value=1.6e-08)
Length = 889
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 200 FTGEISPAMIKDVGVNXVILGHSERRTIFGEKD-ELVAEKVAHALESGLKVIACIGETLE 376
+ E+S A+ D IL E++ I + + E+ E++AH +E +V+A LE
Sbjct: 116 YARELSEALAGDDHSKQNILNELEKKLISAQTEKEIALEELAHVIEQRDQVVAERDRALE 175
Query: 377 E 379
E
Sbjct: 176 E 176
>SB_54138| Best HMM Match : rve (HMM E-Value=6.8e-24)
Length = 2160
Score = 28.3 bits (60), Expect = 6.0
Identities = 28/108 (25%), Positives = 48/108 (44%)
Frame = -3
Query: 410 KQLPQSCQILSLRESHQYRQ*LSSQIQGHEQPFQQQVHLFHQKLFFFQNDQV*PXLLQRL 231
+QL Q Q+ RE Q +Q Q ++ QQQ HL Q+ Q + + Q+
Sbjct: 1533 QQLQQQ-QLQRQRELQQQQQQQQQQQLQRQRELQQQQHLQQQRQLQQQQQYIEQKIRQQQ 1591
Query: 230 *S*RVKFHQ*KLLLETSNSSGLQLRHYQE**SSHKTGK*QEHQQLPQH 87
+ + +Q + + QL+H Q+ + + Q+ Q+LPQH
Sbjct: 1592 LAHQQYTNQQQQQILYQQQQ--QLQHQQQQQQLQQQQQLQQQQRLPQH 1637
>SB_56497| Best HMM Match : Extensin_2 (HMM E-Value=0.16)
Length = 814
Score = 28.3 bits (60), Expect = 6.0
Identities = 28/108 (25%), Positives = 48/108 (44%)
Frame = -3
Query: 410 KQLPQSCQILSLRESHQYRQ*LSSQIQGHEQPFQQQVHLFHQKLFFFQNDQV*PXLLQRL 231
+QL Q Q+ RE Q +Q Q ++ QQQ HL Q+ Q + + Q+
Sbjct: 187 QQLQQQ-QLQRQRELQQQQQQQQQQQLQRQRELQQQQHLQQQRQLQQQQQYIEQKIRQQQ 245
Query: 230 *S*RVKFHQ*KLLLETSNSSGLQLRHYQE**SSHKTGK*QEHQQLPQH 87
+ + +Q + + QL+H Q+ + + Q+ Q+LPQH
Sbjct: 246 LAHQQYTNQQQQQILYQQQQ--QLQHQQQQQQLQQQQQLQQQQRLPQH 291
>SB_25405| Best HMM Match : DUF343 (HMM E-Value=0.076)
Length = 178
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/42 (23%), Positives = 20/42 (47%)
Frame = +2
Query: 482 VWAIGTGKTATPQQAQDVHHALRNWLSANVSGSVSDAVRIQY 607
VW G+ +T D + +R W +A + +SD + + +
Sbjct: 110 VWMAGSRRTGCENDNVDTNQVMRFWYNAETNELISDEIGVAF 151
>SB_52498| Best HMM Match : Chromate_transp (HMM E-Value=0.17)
Length = 655
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/66 (28%), Positives = 27/66 (40%)
Frame = -1
Query: 418 LSKNNFLSLARFSLFESLTNTGNDFQARFKGMSNLFSNKFIFFTKNCSSFRMTKYNPIYS 239
LS+ +SL + F + T G A + LF F F+ +C KY +
Sbjct: 429 LSEIICISLVLLTKFIAYTLMGLVLSAEYYSHVLLFIFTFAFYVWHCFCSVTAKYQQLLK 488
Query: 238 NVFDHS 221
FDHS
Sbjct: 489 LTFDHS 494
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,309,356
Number of Sequences: 59808
Number of extensions: 446692
Number of successful extensions: 1207
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1202
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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