Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0954
         (599 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    25   0.49 
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           25   0.49 
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    24   1.1  
AY052395-1|AAL15469.1|   76|Tribolium castaneum tryptophan oxyge...    24   1.1  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    24   1.1  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    24   1.1  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     23   2.6  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   6.0  

>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 25.0 bits (52), Expect = 0.49
 Identities = 14/66 (21%), Positives = 28/66 (42%)
 Frame = +2

Query: 140 GVASKKKKTKILQGSFARIEKRFHTRSQLPQS*YHTQQPVSDVHTYTETDSSPSTWFVSS 319
           G+  K+++T   +     +EK FH    L +     ++ +   HT   ++     WF + 
Sbjct: 230 GMEPKRQRTAYTRHQILELEKEFHYNRYLTR-----RRRIEIAHTLVLSERQIKIWFQNR 284

Query: 320 QTKTSK 337
           + K  K
Sbjct: 285 RMKWKK 290


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 25.0 bits (52), Expect = 0.49
 Identities = 14/66 (21%), Positives = 28/66 (42%)
 Frame = +2

Query: 140 GVASKKKKTKILQGSFARIEKRFHTRSQLPQS*YHTQQPVSDVHTYTETDSSPSTWFVSS 319
           G+  K+++T   +     +EK FH    L +     ++ +   HT   ++     WF + 
Sbjct: 230 GMEPKRQRTAYTRHQILELEKEFHYNRYLTR-----RRRIEIAHTLVLSERQIKIWFQNR 284

Query: 320 QTKTSK 337
           + K  K
Sbjct: 285 RMKWKK 290


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = -1

Query: 338 FWRFW--FDWKQTTLTVMNLFPYMYVHLI 258
           +W  W  + W     TV ++ PY+  H+I
Sbjct: 29  YWGTWSTYRWGNGRFTVDHIDPYLCTHII 57


>AY052395-1|AAL15469.1|   76|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 76

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 12/47 (25%), Positives = 20/47 (42%)
 Frame = +2

Query: 170 ILQGSFARIEKRFHTRSQLPQS*YHTQQPVSDVHTYTETDSSPSTWF 310
           +L G +  ++K    +  L +      QPV D H +  T  +   WF
Sbjct: 22  MLYGEYLMLDKILEAQRLLSEQ---NNQPVHDEHLFIVTHQAYELWF 65


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 12/47 (25%), Positives = 20/47 (42%)
 Frame = +2

Query: 170 ILQGSFARIEKRFHTRSQLPQS*YHTQQPVSDVHTYTETDSSPSTWF 310
           +L G +  ++K    +  L +      QPV D H +  T  +   WF
Sbjct: 22  MLYGEYLMLDKILEAQRLLSEQ---NNQPVHDEHLFIVTHQAYELWF 65


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 12/47 (25%), Positives = 20/47 (42%)
 Frame = +2

Query: 170 ILQGSFARIEKRFHTRSQLPQS*YHTQQPVSDVHTYTETDSSPSTWF 310
           +L G +  ++K    +  L +      QPV D H +  T  +   WF
Sbjct: 22  MLYGEYLMLDKILEAQRLLSEQ---NNQPVHDEHLFIVTHQAYELWF 65


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 12/57 (21%), Positives = 24/57 (42%)
 Frame = +2

Query: 140 GVASKKKKTKILQGSFARIEKRFHTRSQLPQS*YHTQQPVSDVHTYTETDSSPSTWF 310
           G+  K+++T   +     +EK FH    L +     ++ +   HT   ++     WF
Sbjct: 230 GMEPKRQRTAYTRHQILELEKEFHYNRYLTR-----RRRIEIAHTLVLSERQIKIWF 281


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 390 VNPEPQIEIPHN 425
           +NP+PQI  P N
Sbjct: 417 INPQPQITSPSN 428


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,153
Number of Sequences: 336
Number of extensions: 3901
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15143945
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)