Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0954
(599 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 30 0.30
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 29 0.69
SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyc... 28 0.91
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 27 1.6
SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|... 27 2.8
SPAC6G10.03c |||abhydrolase family protein, unknown biological r... 26 3.7
SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr... 25 6.4
SPBC146.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 6.4
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 25 8.5
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 8.5
>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 773
Score = 29.9 bits (64), Expect = 0.30
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -3
Query: 252 CCV*YYD*GSWLLVWNRFSILANDPWRILVFFFLD 148
C Y G+W +W S+ +N W+IL++ F D
Sbjct: 76 CSPIYIKEGNWHYIWTCTSLKSNGEWKILLWKFND 110
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 28.7 bits (61), Expect = 0.69
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = -2
Query: 472 FLSPES*IHFII*GGKLCGISICGSGLTFLCRVYVQRFIRYLL 344
FL + IH+ I G +L SIC G +FL + + Q+F +L+
Sbjct: 987 FLLRQQDIHYFICGIRLLNQSICSLGSSFLSK-FSQKFHGFLI 1028
>SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 349
Score = 28.3 bits (60), Expect = 0.91
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -2
Query: 565 FSAPVHSKVFLVQLPAQAFLFQPDVVSVNDAFLSPES*IHFI 440
FS PV +K +L L +++S++D F+SP I+F+
Sbjct: 55 FSTPVLAKRTYRELKLLKHLRHENIISLSDIFISPFEDIYFV 96
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 27.5 bits (58), Expect = 1.6
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +2
Query: 203 RFHTRSQLPQS*YHTQ--QPVSDVHTYTETDSSPSTWFVSSQTKTSKRF 343
R+ T SQ Q YH + H T+S PS+ VSS + T K F
Sbjct: 113 RYETSSQPSQEVYHPHAGKAAQSAHVMNSTESRPSSAHVSS-SYTQKPF 160
>SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 440
Score = 26.6 bits (56), Expect = 2.8
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -3
Query: 153 LDATPIWFCLVPIYWSHS 100
+D P WFCL+ W++S
Sbjct: 171 IDVHPSWFCLMKALWTNS 188
>SPAC6G10.03c |||abhydrolase family protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 428
Score = 26.2 bits (55), Expect = 3.7
Identities = 19/75 (25%), Positives = 31/75 (41%)
Frame = +3
Query: 219 ASSLSHNITHSNPYQMYIHIRKQIHHRQRGLFPVKPKPPKDFNKYLMNRCTYTLQRNVNP 398
ASS H + P + Q GL P +P PK+ L T+ ++NV P
Sbjct: 226 ASSAVHAVMDEPPLSNVTNEVLQTQEETTGLEPSRPSKPKN---PLPRFITFLWEQNVTP 282
Query: 399 EPQIEIPHNLPPQMI 443
+ + L P+++
Sbjct: 283 FSLLRLSGPLGPKLM 297
>SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 25.4 bits (53), Expect = 6.4
Identities = 14/65 (21%), Positives = 28/65 (43%)
Frame = +1
Query: 157 KEN*NPPRIIRENRKAIPHKKPAPSVIISHTATRIRCTYIYGNRFITVNVVCFQSNQNLQ 336
K N PP ++ + I K P P + +R ++ N+ I CF+++ ++
Sbjct: 187 KNNFRPPPLVESSVVRIEPKNPPPPLAFEEWDGLLRIVFLRKNKTIG---ACFKTSSIIE 243
Query: 337 KISIN 351
+ N
Sbjct: 244 MVENN 248
>SPBC146.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 263
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +3
Query: 180 DHSRESKSDSTQEASSLSHNITHSNPYQMYIHIRKQI 290
D +R S DST + LSH+I+ +Y ++ +
Sbjct: 30 DRTRSSSGDSTSNSLKLSHHISDELINAIYKELKSPV 66
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Frame = -1
Query: 326 WFDWKQTTLTV----MNL-FPYMYVHLIRVAVCDIMTE 228
W W L V MNL + ++ + +R A C+ MTE
Sbjct: 218 WVSWININLIVNEPCMNLLYSFLQIEELRCAACETMTE 255
>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 390
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/40 (25%), Positives = 24/40 (60%)
Frame = +3
Query: 120 EQGKTKLELHPRKRKLKSSKDHSRESKSDSTQEASSLSHN 239
E+ +LH RK+ ++ + ++S + ++Q+ + LSH+
Sbjct: 80 EKKSLSCDLHSRKQLIEDDLSNRKKSINIASQKLAGLSHS 119
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,660,892
Number of Sequences: 5004
Number of extensions: 59677
Number of successful extensions: 177
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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